CAZyme3D

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Entry ID

Information for CAZyme ID: SQI80311.1

Basic Information

GenBank IDSQI80311.1
FamilyGH8
Sequence Length368
UniProt IDA0A2X4XV69(100,100)Download
Average pLDDT?93.75
CAZy50 ID97690
CAZy50 RepNo, AJR01156.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID571
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella oxytoca

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNAVRAVVLS  ICMLAAAQAS  AACRWPAWEQ  FKQEYVSAEG  RVIDPSDSRK  ITTSEGQSYG60
LFFALAANDR  EGFRKLFEWT  QNNLAEGDLR  AHLPGWLWGK  KSDDEWTVLD  NNSASDSDLW120
IAWALLEAGR  LWETPQYTEV  GKALLARIAD  EEVATVPGLG  PMILPGKVGF  VDDGGWRFNP180
SYLPPQLATY  FAVFGAPWPK  IRDGNLRLLL  ETAPKGFSPD  WVRYEKGKGW  QLKAEKPIIG240
SYDAIRVYLW  AGMLDDGDKQ  KARLLTRFKP  MAARTVEQGV  PPEKTNVATG  KTTGNGPVGF300
SAALLPFLQH  EDARAIQRQR  VADHYPGADA  YYSTVLTLFG  QGWDQHRFRF  TAGGELRPDW360
NQECTSSH368

Predicted 3D structure by AlphaFold2 with pLDDT = 93.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(25-343)

MNAVRAVVLS  ICMLAAAQAS  AACRWPAWEQ  FKQEYVSAEG  RVIDPSDSRK  ITTSEGQSYG60
LFFALAANDR  EGFRKLFEWT  QNNLAEGDLR  AHLPGWLWGK  KSDDEWTVLD  NNSASDSDLW120
IAWALLEAGR  LWETPQYTEV  GKALLARIAD  EEVATVPGLG  PMILPGKVGF  VDDGGWRFNP180
SYLPPQLATY  FAVFGAPWPK  IRDGNLRLLL  ETAPKGFSPD  WVRYEKGKGW  QLKAEKPIIG240
SYDAIRVYLW  AGMLDDGDKQ  KARLLTRFKP  MAARTVEQGV  PPEKTNVATG  KTTGNGPVGF300
SAALLPFLQH  EDARAIQRQR  VADHYPGADA  YYSTVLTLFG  QGWDQHRFRF  TAGGELRPDW360
NQECTSSH368

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help