CAZyme3D

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Entry ID

Information for CAZyme ID: SQG48895.1

Basic Information

GenBank IDSQG48895.1
FamilyCBM48, GH13_10
Sequence Length663
UniProt IDC5C8Z1(100,100)Download
Average pLDDT?90.85
CAZy50 ID29475
CAZy50 RepNo, QHG60954.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID465515
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusMicrococcus
SpeciesMicrococcus luteus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTEPRPVDAP  APGLHPIGSD  PVDPAAAERA  AVDAARAVPY  AVWAPHAESV  DLVLVDTEPG60
ALHDAEDRWP  VAAVVPMDPA  AGGWWTPTED  PLAALGLDAA  QPSADPGYGY  RVDGADPVPD120
PRSRRQPDTV  HGPSRRDVAG  RVFTWPDEGW  AGPPGVESDP  AAPQGGGLRG  AVLYELHLGT180
FTAEGTLDAA  IARLPHLTDL  GVTHVELLPV  NSFSGPRNWG  YDGVAWFAVD  ESYGGPAAYR240
RFVAAAHAAG  LGVVQDVVHN  HLGPSGNYLP  VFGPYLGPGG  TGWGDGLNLD  GADSDEVRRF300
VLDNVRFWLE  EMRVDGLRLD  AVHALRDTRA  VHLLEEMAAL  ADGIAARAGR  PVPLLAESDL360
NDPRLVLPRH  AGGLGLAAAW  NDDVHHALHV  AATGETHGYY  ADFAPLEAVA  KVMERTYFHD420
GTRSTFRGRD  HGRPVPDAVP  NHAWVASIQN  HDQVGNRAGG  DRTAAALSEG  ALAAEAALLL480
TGPHVPMLFM  GEEFAAPTPW  PFFTSFREPE  LGDAVRQGRR  REFAAHGWDP  ADVPDPQDPA540
TRDAAVLDWA  EAADGADGQG  RGVRVLAAYR  TLIGLRRTLP  QLTDPRRDRV  RAEVDAARRH600
VRLTRAGEDA  DVVLLVALGA  EPLPVPADLT  RAELLAGHGD  HGPLGPGTVP  AAVPAPGFLL660
LRR663

Predicted 3D structure by AlphaFold2 with pLDDT = 90.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(37-123)+GH13_10(181-495)

MTEPRPVDAP  APGLHPIGSD  PVDPAAAERA  AVDAARAVPY  AVWAPHAESV  DLVLVDTEPG60
ALHDAEDRWP  VAAVVPMDPA  AGGWWTPTED  PLAALGLDAA  QPSADPGYGY  RVDGADPVPD120
PRSRRQPDTV  HGPSRRDVAG  RVFTWPDEGW  AGPPGVESDP  AAPQGGGLRG  AVLYELHLGT180
FTAEGTLDAA  IARLPHLTDL  GVTHVELLPV  NSFSGPRNWG  YDGVAWFAVD  ESYGGPAAYR240
RFVAAAHAAG  LGVVQDVVHN  HLGPSGNYLP  VFGPYLGPGG  TGWGDGLNLD  GADSDEVRRF300
VLDNVRFWLE  EMRVDGLRLD  AVHALRDTRA  VHLLEEMAAL  ADGIAARAGR  PVPLLAESDL360
NDPRLVLPRH  AGGLGLAAAW  NDDVHHALHV  AATGETHGYY  ADFAPLEAVA  KVMERTYFHD420
GTRSTFRGRD  HGRPVPDAVP  NHAWVASIQN  HDQVGNRAGG  DRTAAALSEG  ALAAEAALLL480
TGPHVPMLFM  GEEFAAPTPW  PFFTSFREPE  LGDAVRQGRR  REFAAHGWDP  ADVPDPQDPA540
TRDAAVLDWA  EAADGADGQG  RGVRVLAAYR  TLIGLRRTLP  QLTDPRRDRV  RAEVDAARRH600
VRLTRAGEDA  DVVLLVALGA  EPLPVPADLT  RAELLAGHGD  HGPLGPGTVP  AAVPAPGFLL660
LRR663

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help