CAZyme3D

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Entry ID

Information for CAZyme ID: SQD78248.1

Basic Information

GenBank IDSQD78248.1
FamilyGH133
Sequence Length940
UniProt IDA0A330LQW1(100,100)Download
Average pLDDT?92.30
CAZy50 ID16902
CAZy50 RepNo, UXI04295.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID69539
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyMoritellaceae
GenusMoritella
SpeciesMoritella yayanosii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNDLVSAPYI  EQLYVKGTFN  GWGDDSPMSF  VGEGRYQAVI  CLSADQHSFK  ISDQQGSEAL60
TLSADKQKST  VCYLDNNQAL  VPAKGIGNDL  LFTAPETGLY  TISLLIQGSS  ADDASTLSHQ120
LIITAGGEDL  GAELNRELIS  AQFNKIPAVS  KPLNAKPAPV  LSPNALFEQL  AIRVEDSASF180
AFGDNVDGFY  EGTTQRFVVA  GKYRHKQGWY  LGSFGSFVNN  VINDKAAAPI  ADIYPYGVTH240
HYDNQSSDTL  MLLSQQRGAA  LSVRSAKPSM  LMIAPQLNLA  INASTVTEFA  QGVVYALDPA300
LRQDNTPSYI  AISANKPFSF  KETVFADHPA  LNEHMHLNSN  HVKPVIETVH  AETDFTVYLA360
FAESEQAAID  QATSLLEKDG  YTSHIQQTYD  MLTNSYLWTS  DIEYNRALMW  AKASGKVFVS420
NEFGKGIWAG  LPWFKDCWGR  DSFIALPGIT  LVNGDFSDAK  AIIDNFASMQ  LTDVSSMNYG480
RIPNRVTSLS  NIIYNTTDGT  PWMVRELWDY  LRYSGDEAYA  QAVYPVVQTY  IDGIEKNYLD540
EFGFMTHRDP  DTWMDAKLEG  KLPWSSRGNR  ANDIQVLWFT  SLMVAVELAK  LNDDEASATH600
YLMMADKVQA  SFQSMFWDQD  KGLLADRLKS  DNSGDFQIRP  NQLMTISVPF  DKPLVDDSIG660
AQIVKNAVSE  LLFPWGITSL  SQHDAMFHPY  HDNRDEYHKD  AAYHNGTVWG  WNSGFTVSSL720
IRYGYADFAY  ELSKNLAEQV  LYIGHRGAMS  ENLDAFTNKE  GEITTTGTYA  QAWSVSEFTR780
NGYQDYLGFL  PELMRNAITF  SPCLPAQWQM  FDADVAFGQS  NGLKVTFCRP  ENAIQRYQLC840
YRESTTVVLE  LTLTAADHAK  YQVVLPMSEG  GAVVEFNTQT  AVVSLNGIEV  AAKRVQESYT900
DKIGVLAFSK  PDLSLEFPML  QGQHVLQQQV  EACNYVSVVD  940

Predicted 3D structure by AlphaFold2 with pLDDT = 92.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM69(7-109)+GH133(421-780)

MNDLVSAPYI  EQLYVKGTFN  GWGDDSPMSF  VGEGRYQAVI  CLSADQHSFK  ISDQQGSEAL60
TLSADKQKST  VCYLDNNQAL  VPAKGIGNDL  LFTAPETGLY  TISLLIQGSS  ADDASTLSHQ120
LIITAGGEDL  GAELNRELIS  AQFNKIPAVS  KPLNAKPAPV  LSPNALFEQL  AIRVEDSASF180
AFGDNVDGFY  EGTTQRFVVA  GKYRHKQGWY  LGSFGSFVNN  VINDKAAAPI  ADIYPYGVTH240
HYDNQSSDTL  MLLSQQRGAA  LSVRSAKPSM  LMIAPQLNLA  INASTVTEFA  QGVVYALDPA300
LRQDNTPSYI  AISANKPFSF  KETVFADHPA  LNEHMHLNSN  HVKPVIETVH  AETDFTVYLA360
FAESEQAAID  QATSLLEKDG  YTSHIQQTYD  MLTNSYLWTS  DIEYNRALMW  AKASGKVFVS420
NEFGKGIWAG  LPWFKDCWGR  DSFIALPGIT  LVNGDFSDAK  AIIDNFASMQ  LTDVSSMNYG480
RIPNRVTSLS  NIIYNTTDGT  PWMVRELWDY  LRYSGDEAYA  QAVYPVVQTY  IDGIEKNYLD540
EFGFMTHRDP  DTWMDAKLEG  KLPWSSRGNR  ANDIQVLWFT  SLMVAVELAK  LNDDEASATH600
YLMMADKVQA  SFQSMFWDQD  KGLLADRLKS  DNSGDFQIRP  NQLMTISVPF  DKPLVDDSIG660
AQIVKNAVSE  LLFPWGITSL  SQHDAMFHPY  HDNRDEYHKD  AAYHNGTVWG  WNSGFTVSSL720
IRYGYADFAY  ELSKNLAEQV  LYIGHRGAMS  ENLDAFTNKE  GEITTTGTYA  QAWSVSEFTR780
NGYQDYLGFL  PELMRNAITF  SPCLPAQWQM  FDADVAFGQS  NGLKVTFCRP  ENAIQRYQLC840
YRESTTVVLE  LTLTAADHAK  YQVVLPMSEG  GAVVEFNTQT  AVVSLNGIEV  AAKRVQESYT900
DKIGVLAFSK  PDLSLEFPML  QGQHVLQQQV  EACNYVSVVD  940

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help