CAZyme3D

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Entry ID

Information for CAZyme ID: SOU43078.1

Basic Information

GenBank IDSOU43078.1
FamilyCBM5, GH5_2
Sequence Length385
UniProt IDA0A2K4XFH4(100,100)Download
Average pLDDT?90.00
CAZy50 ID70062
CAZy50 RepNo, CAA76775.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1314868
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas carrageenovora

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGRLDEVVTA  AIAEDMYVII  DFHSHEAHKD  QATAIKFFEE  VATKYGDNNN  VIYEIYNEPL60
QISWEYDIKP  YAETVIDKIR  AIDPDNLIVV  GTPTWSQDVD  VASQNPIDRA  NVAYTLHFYA120
GTHGQSYRNK  AQVALDNGIA  LFATEWGSVN  ADGNGGVNIN  ETDAWMAFLK  TNNISHAMWA180
LNDKSESASM  FTPGGDWDSL  TASGTKAKEI  IQSWHDANDN  IQLDSDGDGI  IDSLDQCENT240
PADTIVDSIG  CEVSDTDADG  VSDDIDQCPN  TPVGETVNDV  GCVLEVEEPQ  TDTDNDGVYD300
DVDQCPDTPA  GASVDSNGCA  IVSSTDCSDI  NAYPNWVKKD  YAAGPYTHNN  TDDKMQYQGN360
AYIANWYTNT  TPGSDASWTL  IYSCN385

Predicted 3D structure by AlphaFold2 with pLDDT = 90.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_2(3-177)+CBM5(346-378)

MGRLDEVVTA  AIAEDMYVII  DFHSHEAHKD  QATAIKFFEE  VATKYGDNNN  VIYEIYNEPL60
QISWEYDIKP  YAETVIDKIR  AIDPDNLIVV  GTPTWSQDVD  VASQNPIDRA  NVAYTLHFYA120
GTHGQSYRNK  AQVALDNGIA  LFATEWGSVN  ADGNGGVNIN  ETDAWMAFLK  TNNISHAMWA180
LNDKSESASM  FTPGGDWDSL  TASGTKAKEI  IQSWHDANDN  IQLDSDGDGI  IDSLDQCENT240
PADTIVDSIG  CEVSDTDADG  VSDDIDQCPN  TPVGETVNDV  GCVLEVEEPQ  TDTDNDGVYD300
DVDQCPDTPA  GASVDSNGCA  IVSSTDCSDI  NAYPNWVKKD  YAAGPYTHNN  TDDKMQYQGN360
AYIANWYTNT  TPGSDASWTL  IYSCN385

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help