Information for CAZyme ID: SOS28949.1
Basic Information
| GenBank ID | SOS28949.1 |
| Family | GT2 |
| Sequence Length | 739 |
| UniProt ID | A0A2K4VZ87(100,100) |
| Average pLDDT? | 90.15 |
| CAZy50 ID | 2859 |
| CAZy50 Rep | No, ASO85436.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 663959 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTNLSLDASP SRTRSSLWLN ALSERFGQQS RTLRRALKTV AIVVGLLLMA LVVTVHLDLY | 60 |
| AQCFFALACF AAMLVIRKIP GRISVLALVT LSLLASLRYM YWRLTSTLDF DNWLDSLLGY | 120 |
| GLIVAEFYTL IVIVLGYVQT AWPLHRKPVI MPSDSSQWPT VDVFIPSYNE ALSIVKLTIF | 180 |
| AAQSIDWPRD KLRVYVLDDG RREDFREFCE QVGVGYLTRE NNYHAKAGNL NEALKSTDGE | 240 |
| YIAMFDADHV PTRSFLQVAM GWFLKDSKLA MLQTPHFFFS PDPFEKNLDT FRSVPNEGEL | 300 |
| FYGLLQDGND LWNATFFCGS CAVLRRSSLL EIGGVATETV TEDAHTALKL NRAGYNTAYL | 360 |
| AIPQAAGLAT ESLSRHVAQR IRWARGMAQI FRTDNPLLGK GLSIGQRLCY ANSMLHFFYG | 420 |
| LPRLVFLTAP LAYLLFGAEV MHASALMITA YVLPHLAHAS LTNSRIQGRF RHSFWNEVYE | 480 |
| AVLAWYIMGP VLMALINPKF GGFNVTDKGG VVEEKFFDWT LARPYIVLLT LNAVVFALGI | 540 |
| YSLYQLGWNN DAITLTIIIN MAWTIYNIII TSAAIAVASE IRQVRTEPRV QARLPIRVTR | 600 |
| VDGVVFNAVT QDFSQTGLGL VLPVDAGIDS GDSITVSLYR GAQTSHFPAT VMFCRDGYLG | 660 |
| TRFDDLSLRQ QSELVRLTFG RADTWASTWG HGKPDTPLAA LREVSHVGVR GVVELLKATR | 720 |
| KDFGRLLPTR KKTSPPPAN | 739 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.15 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT2(162-332)
| MTNLSLDASP SRTRSSLWLN ALSERFGQQS RTLRRALKTV AIVVGLLLMA LVVTVHLDLY | 60 |
| AQCFFALACF AAMLVIRKIP GRISVLALVT LSLLASLRYM YWRLTSTLDF DNWLDSLLGY | 120 |
| GLIVAEFYTL IVIVLGYVQT AWPLHRKPVI MPSDSSQWPT VDVFIPSYNE ALSIVKLTIF | 180 |
| AAQSIDWPRD KLRVYVLDDG RREDFREFCE QVGVGYLTRE NNYHAKAGNL NEALKSTDGE | 240 |
| YIAMFDADHV PTRSFLQVAM GWFLKDSKLA MLQTPHFFFS PDPFEKNLDT FRSVPNEGEL | 300 |
| FYGLLQDGND LWNATFFCGS CAVLRRSSLL EIGGVATETV TEDAHTALKL NRAGYNTAYL | 360 |
| AIPQAAGLAT ESLSRHVAQR IRWARGMAQI FRTDNPLLGK GLSIGQRLCY ANSMLHFFYG | 420 |
| LPRLVFLTAP LAYLLFGAEV MHASALMITA YVLPHLAHAS LTNSRIQGRF RHSFWNEVYE | 480 |
| AVLAWYIMGP VLMALINPKF GGFNVTDKGG VVEEKFFDWT LARPYIVLLT LNAVVFALGI | 540 |
| YSLYQLGWNN DAITLTIIIN MAWTIYNIII TSAAIAVASE IRQVRTEPRV QARLPIRVTR | 600 |
| VDGVVFNAVT QDFSQTGLGL VLPVDAGIDS GDSITVSLYR GAQTSHFPAT VMFCRDGYLG | 660 |
| TRFDDLSLRQ QSELVRLTFG RADTWASTWG HGKPDTPLAA LREVSHVGVR GVVELLKATR | 720 |
| KDFGRLLPTR KKTSPPPAN | 739 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.