CAZyme3D

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Entry ID

Information for CAZyme ID: SOB59603.1

Basic Information

GenBank IDSOB59603.1
FamilyGT28
Sequence Length359
UniProt IDA0A2C8FAM6(100,100)Download
Average pLDDT?91.15
CAZy50 ID114742
CAZy50 RepNo, QLA12305.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID57320
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio profundus
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A2C8FAM6.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSMNRVIITT  GGTGGHIFPA  LALADELRRR  NPDAAILFMG  GSGPEGDLAR  AHGIEFQELP60
AKGIVGRGIS  GLLSGLGWLA  TGLPKAMKAV  RDFKPEAVIG  FGGYAGFCPV  FAAALQAIPT120
AVHEQNSVPG  VTNKVLGKVV  RRVFLSFPDA  KGVFPAGKTR  LVGNPVRDAI  IAVGDKRKDR180
AAGKRILVLG  GSQGARPIND  AIIDGLPLLM  EAGIELVHQA  GKQDFQRVRA  SYETAKADPA240
QVHGFIDNMA  DEYAKADLVI  CRAGATTVFE  IAAAGVPAIF  VPFPHATHDH  QTMNAKAMVD300
IGAAVLLPQK  GMSGDSLAHM  AMELLGNPDR  LSTMETAARG  FAKKHAAADI  ASGLQEMIA359

Predicted 3D structure by AlphaFold2 with pLDDT = 91.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(186-346)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help