CAZyme3D

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Entry ID

Information for CAZyme ID: SNY96652.1

Basic Information

GenBank IDSNY96652.1
FamilyGH13_18
Sequence Length587
UniProt IDA0A7Z7HWQ9(100,100)Download
Average pLDDT?93.74
CAZy50 ID47768
CAZy50 RepNo, QWN36218.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1761789
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusHalomonas
SpeciesHalomonas sp. hl-4

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAFDTTVHA  HLSHLYGPRA  AEVQRRLNLH  LTHFLAARKA  PTATGKRAQH  APSWSEKDQW60
LIAYGDSIVD  DQTPPLAVLN  DFLQARLGER  ISGVHVLPFF  PWSSDDGFSV  IHYREVNPDL120
GDWQHIQTLA  RHYDLMADLV  LNHVSRESLW  FVDYLSGSLP  GRDYFIEVDP  DTDVSAVVRP180
RSSPLLVPIS  TRRGTRYLWA  TFSEDQLDLN  FENPDVLLEF  VGILLFYLEQ  GTRIVRLDAV240
AFLWKRLGTP  CIHLPETHTV  VRLLRAIVDH  VAPGTLLITE  TNVPHHENIS  YFGLDLQADG300
PPDEAHMIYQ  FTLPPLLLHT  LTRGETSTLQ  AWLASLPPLP  DHCTYLNFTA  SHDGIGVRPL360
EGLLPDHERD  ALLELMHRFG  GFVSMRSNPD  GSDTPYEINI  TWFEAMQGTR  KGPDPWQIAR420
FLCSQAIMLS  LQGIPALYIH  TLTGTLNDVE  GVERSGRLRS  INRRRWQRRE  LDLLLDSTAT480
PTHDVFNALS  RLLEYRRQEP  CFHPNAAQRV  LASEPSLLAI  ERGPLASGRR  LLALYNVTEV540
PLSFEQLGDD  VQCALSSTSW  QPLSGETDWQ  PTDPLPPYAV  RWLTNNP587

Predicted 3D structure by AlphaFold2 with pLDDT = 93.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_18(91-439)

MTAFDTTVHA  HLSHLYGPRA  AEVQRRLNLH  LTHFLAARKA  PTATGKRAQH  APSWSEKDQW60
LIAYGDSIVD  DQTPPLAVLN  DFLQARLGER  ISGVHVLPFF  PWSSDDGFSV  IHYREVNPDL120
GDWQHIQTLA  RHYDLMADLV  LNHVSRESLW  FVDYLSGSLP  GRDYFIEVDP  DTDVSAVVRP180
RSSPLLVPIS  TRRGTRYLWA  TFSEDQLDLN  FENPDVLLEF  VGILLFYLEQ  GTRIVRLDAV240
AFLWKRLGTP  CIHLPETHTV  VRLLRAIVDH  VAPGTLLITE  TNVPHHENIS  YFGLDLQADG300
PPDEAHMIYQ  FTLPPLLLHT  LTRGETSTLQ  AWLASLPPLP  DHCTYLNFTA  SHDGIGVRPL360
EGLLPDHERD  ALLELMHRFG  GFVSMRSNPD  GSDTPYEINI  TWFEAMQGTR  KGPDPWQIAR420
FLCSQAIMLS  LQGIPALYIH  TLTGTLNDVE  GVERSGRLRS  INRRRWQRRE  LDLLLDSTAT480
PTHDVFNALS  RLLEYRRQEP  CFHPNAAQRV  LASEPSLLAI  ERGPLASGRR  LLALYNVTEV540
PLSFEQLGDD  VQCALSSTSW  QPLSGETDWQ  PTDPLPPYAV  RWLTNNP587

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help