CAZyme3D

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Entry ID

Information for CAZyme ID: SNY81908.1

Basic Information

GenBank IDSNY81908.1
FamilyCBM50, GH23
Sequence Length460
UniProt IDA0A8B4GG86(100,100)Download
Average pLDDT?74.67
CAZy50 ID65563
CAZy50 RepNo, QBH95679.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1938820
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia sp. JKS000199

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAKAIFLAS  VLLVGCQSSR  QDAPAPEQHA  QSLSSAGQDG  EAGEYTGNGR  ASSARWLDNN60
SPAAQQDLWN  FISDELKMEV  PENSRIRDQK  RKYLKSKSYL  HDVTLRAEPY  MYWIVGQIKK120
RNMPMELVLL  PIVESAFDPH  ATSSANAAGL  WQIVPQTGRN  YGLKNNQWYD  GRRDVVASTT180
AALNMMQRLN  RMFNGDWLLT  VAAYNSGEGR  VMQAVKANKR  QGKPTNFWAL  SLPRETSIYV240
PKMLALSDII  KNSKKYGVKL  PKTDETRALA  RIDVGQQIQL  TQAAEMAGLS  VTKMKAYNPG300
YKKGVTAPNG  PHYIMVPKGH  ADQLKDSLAD  GQIAVTQPTT  QLAKNSGLSG  GSSYKVRSGD360
TLSAIAKRLN  VKTSDLQSWN  NLRAKSALKV  GQTLQVASNT  GSNSSITYQV  RKGDSLASIA420
RRHGVDINDV  MRWNSTLAKG  NLQPGLKLTL  FVGNKMTPDT  460

Predicted 3D structure by AlphaFold2 with pLDDT = 74.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(110-255)+CBM50(354-396)+CBM50(408-450)

MKAKAIFLAS  VLLVGCQSSR  QDAPAPEQHA  QSLSSAGQDG  EAGEYTGNGR  ASSARWLDNN60
SPAAQQDLWN  FISDELKMEV  PENSRIRDQK  RKYLKSKSYL  HDVTLRAEPY  MYWIVGQIKK120
RNMPMELVLL  PIVESAFDPH  ATSSANAAGL  WQIVPQTGRN  YGLKNNQWYD  GRRDVVASTT180
AALNMMQRLN  RMFNGDWLLT  VAAYNSGEGR  VMQAVKANKR  QGKPTNFWAL  SLPRETSIYV240
PKMLALSDII  KNSKKYGVKL  PKTDETRALA  RIDVGQQIQL  TQAAEMAGLS  VTKMKAYNPG300
YKKGVTAPNG  PHYIMVPKGH  ADQLKDSLAD  GQIAVTQPTT  QLAKNSGLSG  GSSYKVRSGD360
TLSAIAKRLN  VKTSDLQSWN  NLRAKSALKV  GQTLQVASNT  GSNSSITYQV  RKGDSLASIA420
RRHGVDINDV  MRWNSTLAKG  NLQPGLKLTL  FVGNKMTPDT  460

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help