CAZyme3D

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Entry ID

Information for CAZyme ID: SNV89727.1

Basic Information

GenBank IDSNV89727.1
FamilyCBM50, GH23
Sequence Length351
UniProt IDA0A240B201(100,100)Download
Average pLDDT?79.88
CAZy50 ID65563
CAZy50 RepNo, QBH95679.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID61651
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia ficaria

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYWIVGQIKK  RNMPMELVLL  PIVESAFDPH  ATSSANAAGL  WQIVPQTGRN  YGLKNNQWYD60
GRRDVVASTT  AALNMMQYLN  RMFNGDWLLT  IAAYNSGEGR  VMKAVKANKR  QGKPTNFWAL120
SLPRETSIYV  PKMLALSDIV  KHSKKYGVNL  PKTDETRALA  RIDVGQQIRL  TQAAEMAGLS180
VTKMKAYNPG  YKKGVTAPNG  PHYIMVPKGN  ADQLKDSLAD  GQIAVTQPTT  QLAKNSGLTG240
GSSYKVRSGD  TLSGIAKRLN  IKTSDLQSWN  NLRAKSALKV  GQTLQVASNT  GSNSSITYQV300
RQGDSLASIA  RRHGVDINDV  MRWNSTLGKG  NSLQPGLKLT  LFVDNKMTPD  T351

Predicted 3D structure by AlphaFold2 with pLDDT = 79.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(3-145)+CBM50(244-286)+CBM50(298-341)

MYWIVGQIKK  RNMPMELVLL  PIVESAFDPH  ATSSANAAGL  WQIVPQTGRN  YGLKNNQWYD60
GRRDVVASTT  AALNMMQYLN  RMFNGDWLLT  IAAYNSGEGR  VMKAVKANKR  QGKPTNFWAL120
SLPRETSIYV  PKMLALSDIV  KHSKKYGVNL  PKTDETRALA  RIDVGQQIRL  TQAAEMAGLS180
VTKMKAYNPG  YKKGVTAPNG  PHYIMVPKGN  ADQLKDSLAD  GQIAVTQPTT  QLAKNSGLTG240
GSSYKVRSGD  TLSGIAKRLN  IKTSDLQSWN  NLRAKSALKV  GQTLQVASNT  GSNSSITYQV300
RQGDSLASIA  RRHGVDINDV  MRWNSTLGKG  NSLQPGLKLT  LFVDNKMTPD  T351

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help