Information for CAZyme ID: SNV80057.1
Basic Information
| GenBank ID | SNV80057.1 |
| Family | GT2 |
| Sequence Length | 867 |
| UniProt ID | A0A240A9K4(100,100) |
| Average pLDDT? | 85.98 |
| CAZy50 ID | 2859 |
| CAZy50 Rep | No, ASO85436.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 61651 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Yersiniaceae |
| Genus | Serratia |
| Species | Serratia ficaria |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSRVLSLLLV PPVRQAVQAR YRGYRRQGSS APTAFFTALL AALGWLFLRF ESPAWRRVRA | 60 |
| GRAYWFPHLS AERPRPADGV RYLLQGLWLL LFRSGRAPMG RHYFAGWRRL QLRYAHWLQS | 120 |
| IPQRLAGAGV EQRSVERLSR LSRGMRRALF VLVSVLAAIL ALLCISQPFD LSAQLVFVLL | 180 |
| LWGIAMVVRR VPGRLPGLML IVLSLTVSCR YLWWRYTATL NWDDPLSLTC GLLLLAAETY | 240 |
| AWVVLVLGYF QTLWPLNRQP VPLPADSANW PTVDLLVPTY NEDLAVVKPT LYAALGIDWP | 300 |
| KDKIGIYLLD DGNRPEFRAF AEEIGVKYIA RPTHEHAKAG NINHALKQAT GEFVAIFDCD | 360 |
| HVPTRSFLQL TMGWFFKDKK LAMLQTPHHF FSPDPFERNL GRFRQTPNEG TLFYGLVQDG | 420 |
| NDMWDATFFC GSCAILRRSA LDEIGGIAVE TVTEDAHTSL RLHRRGHTSA YIRIPQAAGL | 480 |
| ATESLSAHIG QRIRWARGMV QIFRLDNPLL GKGLKLAQRL CYANAMLHFL SGIPRLIFLT | 540 |
| APLAFLLLHA YIIFAPALAI ALYVLPHMIH ASLTNSRIQG KYRHSFWSEI YETVLAWYIA | 600 |
| RPTTVALFNP HKGKFNVTAK GGLVEEEHVD WVITRPYMFL VVLNLAGLAF GIWRLGYGPA | 660 |
| DEVMTVIISL VWVLYNMTIL GGAVAVAVEA KQVRQSHRVE IAMPAAVARG DGHLFPCTLR | 720 |
| DYSDGGVGIE MRVADALQDG DKVSLLLKRG QQEYSFPCVV TRAFGSKVGV RLVELSTREH | 780 |
| IDFIQCTFAR ADTWALWQDG FPEDKPIESL RDVLALGFRG YVRMADYAPP MVRGLLVGLT | 840 |
| SLIAWLASFI PHGVGRDPAF SQKETVG | 867 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.98 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT2(275-445)
| MSRVLSLLLV PPVRQAVQAR YRGYRRQGSS APTAFFTALL AALGWLFLRF ESPAWRRVRA | 60 |
| GRAYWFPHLS AERPRPADGV RYLLQGLWLL LFRSGRAPMG RHYFAGWRRL QLRYAHWLQS | 120 |
| IPQRLAGAGV EQRSVERLSR LSRGMRRALF VLVSVLAAIL ALLCISQPFD LSAQLVFVLL | 180 |
| LWGIAMVVRR VPGRLPGLML IVLSLTVSCR YLWWRYTATL NWDDPLSLTC GLLLLAAETY | 240 |
| AWVVLVLGYF QTLWPLNRQP VPLPADSANW PTVDLLVPTY NEDLAVVKPT LYAALGIDWP | 300 |
| KDKIGIYLLD DGNRPEFRAF AEEIGVKYIA RPTHEHAKAG NINHALKQAT GEFVAIFDCD | 360 |
| HVPTRSFLQL TMGWFFKDKK LAMLQTPHHF FSPDPFERNL GRFRQTPNEG TLFYGLVQDG | 420 |
| NDMWDATFFC GSCAILRRSA LDEIGGIAVE TVTEDAHTSL RLHRRGHTSA YIRIPQAAGL | 480 |
| ATESLSAHIG QRIRWARGMV QIFRLDNPLL GKGLKLAQRL CYANAMLHFL SGIPRLIFLT | 540 |
| APLAFLLLHA YIIFAPALAI ALYVLPHMIH ASLTNSRIQG KYRHSFWSEI YETVLAWYIA | 600 |
| RPTTVALFNP HKGKFNVTAK GGLVEEEHVD WVITRPYMFL VVLNLAGLAF GIWRLGYGPA | 660 |
| DEVMTVIISL VWVLYNMTIL GGAVAVAVEA KQVRQSHRVE IAMPAAVARG DGHLFPCTLR | 720 |
| DYSDGGVGIE MRVADALQDG DKVSLLLKRG QQEYSFPCVV TRAFGSKVGV RLVELSTREH | 780 |
| IDFIQCTFAR ADTWALWQDG FPEDKPIESL RDVLALGFRG YVRMADYAPP MVRGLLVGLT | 840 |
| SLIAWLASFI PHGVGRDPAF SQKETVG | 867 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.