Information for CAZyme ID: SLM49459.1
Basic Information
GenBank ID | SLM49459.1 |
Family | GH13 |
Sequence Length | 804 |
UniProt ID | A0A1W1I9A1(100,100)![]() |
Average pLDDT? | 93.25 |
CAZy50 ID | 25724 |
CAZy50 Rep | No, BAZ32413.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1325564 |
Kingdom | Bacteria |
Phylum | Nitrospirota |
Class | Nitrospiria |
Order | Nitrospirales |
Family | Nitrospiraceae |
Genus | Nitrospira |
Species | Nitrospira japonica |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MPTRKVEFQF ITGLKRSIFR NARLRGSWNA NGRYSADWTE SPMQKTVGED GCPVFKASVS | 60 |
LDLADQGTLF RWGVVVDDPQ GNNLWGIPTE IPDMNSADRY RQFGLTPGSS AQIERYYLTY | 120 |
GRRLGANKHF ATATSKPGLR FAVWAPNARS VEVVFGKPLN GHIADDGTGI DAAQPVVTLS | 180 |
RGADGMWQGG PPGNFASFMS LPYMYRIVNA GGDTVYRTDI FSRSQIGRGG IKPPDGAGWT | 240 |
GTVDQLDGTV SCSVVIDPDV VRRTFESTAP GAAPDLISAE EFWTTEFTHG RPVPNRLEDL | 300 |
VIYELHVGSL GFGKTGAGDL SDAMSFLDHL VLLGVNAVEL LPMAEFSGNV GWGYGDSHPF | 360 |
CIESSAGGRD KYRHFVRECH RRGMAVIQDV VYNHYDNDAE RAQWQYDSTA PEQNIYYWYE | 420 |
GRSSDYAFPD GGYLNNGSSG YTPRFWEDVV RQQFISSAAF LTEEMHVDGL RVDLTQAIHR | 480 |
DNTLNADGRS IGSANLFGQK FLREWSRTLH MIRPTTILIA EDHTGWDAVT QPPAQGGLGF | 540 |
DGTWHVAFYH DLIGDSDMSG DRARLLKRAG LDGIDPLQMD WFAGSLYDTQ YRRVVFHESH | 600 |
DEAGNASGTA RTMVVAVNDA PLVDATRMAA ESRSRLSFGL SLLSAGTPMF FMGEEIGAQK | 660 |
RYTFNGFLQH REDILGERTG NGKALFRFYQ DVIDLGRRLE SVRSHNIDIL HQSNANRVMA | 720 |
WKRWDGAEQV IVAASFNNAP FANGYVIAKD ALAIPDAGWK EVLNSDAVIY GGQNVGNSGA | 780 |
IIPSSSGQLE VVIPANGFVV LIKQ | 804 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.25 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM48(124-219)+GH13_9(329-657)
MPTRKVEFQF ITGLKRSIFR NARLRGSWNA NGRYSADWTE SPMQKTVGED GCPVFKASVS | 60 |
LDLADQGTLF RWGVVVDDPQ GNNLWGIPTE IPDMNSADRY RQFGLTPGSS AQIERYYLTY | 120 |
GRRLGANKHF ATATSKPGLR FAVWAPNARS VEVVFGKPLN GHIADDGTGI DAAQPVVTLS | 180 |
RGADGMWQGG PPGNFASFMS LPYMYRIVNA GGDTVYRTDI FSRSQIGRGG IKPPDGAGWT | 240 |
GTVDQLDGTV SCSVVIDPDV VRRTFESTAP GAAPDLISAE EFWTTEFTHG RPVPNRLEDL | 300 |
VIYELHVGSL GFGKTGAGDL SDAMSFLDHL VLLGVNAVEL LPMAEFSGNV GWGYGDSHPF | 360 |
CIESSAGGRD KYRHFVRECH RRGMAVIQDV VYNHYDNDAE RAQWQYDSTA PEQNIYYWYE | 420 |
GRSSDYAFPD GGYLNNGSSG YTPRFWEDVV RQQFISSAAF LTEEMHVDGL RVDLTQAIHR | 480 |
DNTLNADGRS IGSANLFGQK FLREWSRTLH MIRPTTILIA EDHTGWDAVT QPPAQGGLGF | 540 |
DGTWHVAFYH DLIGDSDMSG DRARLLKRAG LDGIDPLQMD WFAGSLYDTQ YRRVVFHESH | 600 |
DEAGNASGTA RTMVVAVNDA PLVDATRMAA ESRSRLSFGL SLLSAGTPMF FMGEEIGAQK | 660 |
RYTFNGFLQH REDILGERTG NGKALFRFYQ DVIDLGRRLE SVRSHNIDIL HQSNANRVMA | 720 |
WKRWDGAEQV IVAASFNNAP FANGYVIAKD ALAIPDAGWK EVLNSDAVIY GGQNVGNSGA | 780 |
IIPSSSGQLE VVIPANGFVV LIKQ | 804 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.