CAZyme3D

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Entry ID

Information for CAZyme ID: SLM49459.1

Basic Information

GenBank IDSLM49459.1
FamilyGH13
Sequence Length804
UniProt IDA0A1W1I9A1(100,100)Download
Average pLDDT?93.25
CAZy50 ID25724
CAZy50 RepNo, BAZ32413.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1325564
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira japonica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTRKVEFQF  ITGLKRSIFR  NARLRGSWNA  NGRYSADWTE  SPMQKTVGED  GCPVFKASVS60
LDLADQGTLF  RWGVVVDDPQ  GNNLWGIPTE  IPDMNSADRY  RQFGLTPGSS  AQIERYYLTY120
GRRLGANKHF  ATATSKPGLR  FAVWAPNARS  VEVVFGKPLN  GHIADDGTGI  DAAQPVVTLS180
RGADGMWQGG  PPGNFASFMS  LPYMYRIVNA  GGDTVYRTDI  FSRSQIGRGG  IKPPDGAGWT240
GTVDQLDGTV  SCSVVIDPDV  VRRTFESTAP  GAAPDLISAE  EFWTTEFTHG  RPVPNRLEDL300
VIYELHVGSL  GFGKTGAGDL  SDAMSFLDHL  VLLGVNAVEL  LPMAEFSGNV  GWGYGDSHPF360
CIESSAGGRD  KYRHFVRECH  RRGMAVIQDV  VYNHYDNDAE  RAQWQYDSTA  PEQNIYYWYE420
GRSSDYAFPD  GGYLNNGSSG  YTPRFWEDVV  RQQFISSAAF  LTEEMHVDGL  RVDLTQAIHR480
DNTLNADGRS  IGSANLFGQK  FLREWSRTLH  MIRPTTILIA  EDHTGWDAVT  QPPAQGGLGF540
DGTWHVAFYH  DLIGDSDMSG  DRARLLKRAG  LDGIDPLQMD  WFAGSLYDTQ  YRRVVFHESH600
DEAGNASGTA  RTMVVAVNDA  PLVDATRMAA  ESRSRLSFGL  SLLSAGTPMF  FMGEEIGAQK660
RYTFNGFLQH  REDILGERTG  NGKALFRFYQ  DVIDLGRRLE  SVRSHNIDIL  HQSNANRVMA720
WKRWDGAEQV  IVAASFNNAP  FANGYVIAKD  ALAIPDAGWK  EVLNSDAVIY  GGQNVGNSGA780
IIPSSSGQLE  VVIPANGFVV  LIKQ804

Predicted 3D structure by AlphaFold2 with pLDDT = 93.25 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(124-219)+GH13_9(329-657)

MPTRKVEFQF  ITGLKRSIFR  NARLRGSWNA  NGRYSADWTE  SPMQKTVGED  GCPVFKASVS60
LDLADQGTLF  RWGVVVDDPQ  GNNLWGIPTE  IPDMNSADRY  RQFGLTPGSS  AQIERYYLTY120
GRRLGANKHF  ATATSKPGLR  FAVWAPNARS  VEVVFGKPLN  GHIADDGTGI  DAAQPVVTLS180
RGADGMWQGG  PPGNFASFMS  LPYMYRIVNA  GGDTVYRTDI  FSRSQIGRGG  IKPPDGAGWT240
GTVDQLDGTV  SCSVVIDPDV  VRRTFESTAP  GAAPDLISAE  EFWTTEFTHG  RPVPNRLEDL300
VIYELHVGSL  GFGKTGAGDL  SDAMSFLDHL  VLLGVNAVEL  LPMAEFSGNV  GWGYGDSHPF360
CIESSAGGRD  KYRHFVRECH  RRGMAVIQDV  VYNHYDNDAE  RAQWQYDSTA  PEQNIYYWYE420
GRSSDYAFPD  GGYLNNGSSG  YTPRFWEDVV  RQQFISSAAF  LTEEMHVDGL  RVDLTQAIHR480
DNTLNADGRS  IGSANLFGQK  FLREWSRTLH  MIRPTTILIA  EDHTGWDAVT  QPPAQGGLGF540
DGTWHVAFYH  DLIGDSDMSG  DRARLLKRAG  LDGIDPLQMD  WFAGSLYDTQ  YRRVVFHESH600
DEAGNASGTA  RTMVVAVNDA  PLVDATRMAA  ESRSRLSFGL  SLLSAGTPMF  FMGEEIGAQK660
RYTFNGFLQH  REDILGERTG  NGKALFRFYQ  DVIDLGRRLE  SVRSHNIDIL  HQSNANRVMA720
WKRWDGAEQV  IVAASFNNAP  FANGYVIAKD  ALAIPDAGWK  EVLNSDAVIY  GGQNVGNSGA780
IIPSSSGQLE  VVIPANGFVV  LIKQ804

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help