CAZyme3D

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Entry ID

Information for CAZyme ID: SLM48589.1

Basic Information

GenBank IDSLM48589.1
FamilyGH23
Sequence Length414
UniProt IDA0A1W1I6U9(100,100)Download
Average pLDDT?83.90
CAZy50 ID90501
CAZy50 RepNo, BAV34373.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1325564
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira japonica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPDRRIRFLI  SAVLSTALLS  CESTDRMVAA  TEQALASRTG  RTVLEVVQSK  DPSKAVQRRL60
DQYAQDPDRL  LSDLRAAQHD  FQTLYKALNG  KVAEKWGPKE  VKLPEKKKYV  KYTQSYKSRA120
IVDFDKAEIT  VETLDAGDAR  RSLNRAITAA  LLTPQDPRTV  DLFSDKETPV  TGEEEPYLLG180
LVLDQQNKPV  RTPEAAESFA  NYLVEKKAAT  RTIDQNGTSK  QATYVTMKMV  ANLSQKQAEK240
YRPYVMRFAE  HYTMSPSLVL  AIMRTESNFN  PYAVSPVPAY  GLMQLVPTSG  GREAYRRAKG300
QDVTPTRDYL  FDPEHNVELG  TAFLNVLMFS  QLDDVANQVS  REYCVIAAYN  TGAGNVFKTF360
SKNRTTALQQ  INDLQPAALY  DRLRSKLPYQ  ETRNYLEKVT  TYRKGFVISS  NASS414

Predicted 3D structure by AlphaFold2 with pLDDT = 83.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(250-406)

MPDRRIRFLI  SAVLSTALLS  CESTDRMVAA  TEQALASRTG  RTVLEVVQSK  DPSKAVQRRL60
DQYAQDPDRL  LSDLRAAQHD  FQTLYKALNG  KVAEKWGPKE  VKLPEKKKYV  KYTQSYKSRA120
IVDFDKAEIT  VETLDAGDAR  RSLNRAITAA  LLTPQDPRTV  DLFSDKETPV  TGEEEPYLLG180
LVLDQQNKPV  RTPEAAESFA  NYLVEKKAAT  RTIDQNGTSK  QATYVTMKMV  ANLSQKQAEK240
YRPYVMRFAE  HYTMSPSLVL  AIMRTESNFN  PYAVSPVPAY  GLMQLVPTSG  GREAYRRAKG300
QDVTPTRDYL  FDPEHNVELG  TAFLNVLMFS  QLDDVANQVS  REYCVIAAYN  TGAGNVFKTF360
SKNRTTALQQ  INDLQPAALY  DRLRSKLPYQ  ETRNYLEKVT  TYRKGFVISS  NASS414

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help