CAZyme3D

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Entry ID

Information for CAZyme ID: SIP63321.1

Basic Information

GenBank IDSIP63321.1
FamilyCE2
Sequence Length274
UniProt IDA0A2K4NR98(100,100)Download
Average pLDDT?94.69
CAZy50 ID132034
CAZy50 RepNo, QTE71982.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEPGIRFYPL  VLGMEPANSR  TVTLVKETQC  MPDNPAATVL  VHSLRMNGSL  EELPARNLKI60
EFIGDSLTSG  EGALAPNGND  EWIPLWFTAC  GNYSFIACRA  LNAERSVLSQ  SGWGVCWDWE120
HNPAHTMPEF  YEQTAGVLQG  PEAEARGCGK  PWDFASWQPD  IICIRLLTND  CGGMNQKNSF180
EQDRDTVVRG  AADFLKIVRR  NNPAAKIVWI  LPGTDVHPEL  AEEAVALARR  EGLENLFTFA240
LPDYGPEDMG  ARFHPNAEYN  RKAGLLLAEF  LKEI274

Predicted 3D structure by AlphaFold2 with pLDDT = 94.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(59-270)

MEPGIRFYPL  VLGMEPANSR  TVTLVKETQC  MPDNPAATVL  VHSLRMNGSL  EELPARNLKI60
EFIGDSLTSG  EGALAPNGND  EWIPLWFTAC  GNYSFIACRA  LNAERSVLSQ  SGWGVCWDWE120
HNPAHTMPEF  YEQTAGVLQG  PEAEARGCGK  PWDFASWQPD  IICIRLLTND  CGGMNQKNSF180
EQDRDTVVRG  AADFLKIVRR  NNPAAKIVWI  LPGTDVHPEL  AEEAVALARR  EGLENLFTFA240
LPDYGPEDMG  ARFHPNAEYN  RKAGLLLAEF  LKEI274

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help