CAZyme3D

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Entry ID

Information for CAZyme ID: SHH18173.1

Basic Information

GenBank IDSHH18173.1
FamilyGT51
Sequence Length830
UniProt IDA0A1M5QX92(100,100)Download
Average pLDDT?87.79
CAZy50 ID15576
CAZy50 RepNo, WDI30871.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1437360
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium erythrophlei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLLVRFLGF  LFAAGTVVFL  VGVAATAGLI  WHFSKDLPDY  SQLQDYEPPV  MTRVHASDGA60
LLGEYSKERR  LYLPIQAVPK  LVINAFLAAE  DKNFYEHGGI  DYSGMARAAV  LYAQNYGSNR120
RPQGASTITQ  QVAKNFLLTN  EVSFSRKIKE  ALLAMRIERA  YSKDKILELY  LNEIYLGLGA180
YGVAAASLVY  FDKSVNELTV  AEAAYLAAMP  KAPGALHPVR  NHDRAVERRN  YVIDRLLENG240
WIKQADADKA  RKDPLIVTSR  TNGAHIFAGE  YFAEEVRRDI  FERYGEKKLY  EGGLSVHTTL300
DPKIQIEARK  TMVAGLVTYD  EAQGWRGALS  KLDITGDWGV  RLADLKSLSD  VAPWRMAVVL360
ETSDQSARIG  FQPGRELGGA  VAKERQTGIV  TLDGVRWAKA  ASGPAKGKTP  NAVSQVLSPG420
DIIYADPLIG  KDGNPVDGQY  RLRQLPEVSG  AMVVMDPWTG  RVLAMVGGFS  FDQSQFNRAT480
QAYRQPGSSF  KPIVYSSALD  NGYTPSTVVV  DAPIEIDQGQ  GAGVWRPENY  SAGKYQGPTT540
LRNALRLSLN  TVTVRLAQDI  GMPLIGEYAK  RFGVYDELPN  YLSYALGAGE  TTVMRMVTAY600
SMFDNGGRRV  KPTLIDRIQD  RYGHTIFKHD  ARECRGCDAP  GGWKNQPEPQ  LVDRREQVLD660
PMTAYQITSM  MEGVVQAGTA  TVVKEVGKPI  AGKTGTTNDQ  KDAWFVGFSP  DIVVGIYMGY720
DKPRNLGRTA  TGGHLAAPIA  RDFLKLALAD  KPAVPFKVPA  GIKLIRVDSK  TGMRAGPGDS780
GRTILEAFKP  GTAPPDNYSV  IGVADADGRL  QQPSPDADRS  LFRPGTGGLY  830

Predicted 3D structure by AlphaFold2 with pLDDT = 87.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(58-236)

MRLLVRFLGF  LFAAGTVVFL  VGVAATAGLI  WHFSKDLPDY  SQLQDYEPPV  MTRVHASDGA60
LLGEYSKERR  LYLPIQAVPK  LVINAFLAAE  DKNFYEHGGI  DYSGMARAAV  LYAQNYGSNR120
RPQGASTITQ  QVAKNFLLTN  EVSFSRKIKE  ALLAMRIERA  YSKDKILELY  LNEIYLGLGA180
YGVAAASLVY  FDKSVNELTV  AEAAYLAAMP  KAPGALHPVR  NHDRAVERRN  YVIDRLLENG240
WIKQADADKA  RKDPLIVTSR  TNGAHIFAGE  YFAEEVRRDI  FERYGEKKLY  EGGLSVHTTL300
DPKIQIEARK  TMVAGLVTYD  EAQGWRGALS  KLDITGDWGV  RLADLKSLSD  VAPWRMAVVL360
ETSDQSARIG  FQPGRELGGA  VAKERQTGIV  TLDGVRWAKA  ASGPAKGKTP  NAVSQVLSPG420
DIIYADPLIG  KDGNPVDGQY  RLRQLPEVSG  AMVVMDPWTG  RVLAMVGGFS  FDQSQFNRAT480
QAYRQPGSSF  KPIVYSSALD  NGYTPSTVVV  DAPIEIDQGQ  GAGVWRPENY  SAGKYQGPTT540
LRNALRLSLN  TVTVRLAQDI  GMPLIGEYAK  RFGVYDELPN  YLSYALGAGE  TTVMRMVTAY600
SMFDNGGRRV  KPTLIDRIQD  RYGHTIFKHD  ARECRGCDAP  GGWKNQPEPQ  LVDRREQVLD660
PMTAYQITSM  MEGVVQAGTA  TVVKEVGKPI  AGKTGTTNDQ  KDAWFVGFSP  DIVVGIYMGY720
DKPRNLGRTA  TGGHLAAPIA  RDFLKLALAD  KPAVPFKVPA  GIKLIRVDSK  TGMRAGPGDS780
GRTILEAFKP  GTAPPDNYSV  IGVADADGRL  QQPSPDADRS  LFRPGTGGLY  830

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help