Information for CAZyme ID: SHH18173.1
Basic Information
GenBank ID | SHH18173.1 |
Family | GT51 |
Sequence Length | 830 |
UniProt ID | A0A1M5QX92(100,100)![]() |
Average pLDDT? | 87.79 |
CAZy50 ID | 15576 |
CAZy50 Rep | No, WDI30871.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1437360 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Hyphomicrobiales |
Family | Nitrobacteraceae |
Genus | Bradyrhizobium |
Species | Bradyrhizobium erythrophlei |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRLLVRFLGF LFAAGTVVFL VGVAATAGLI WHFSKDLPDY SQLQDYEPPV MTRVHASDGA | 60 |
LLGEYSKERR LYLPIQAVPK LVINAFLAAE DKNFYEHGGI DYSGMARAAV LYAQNYGSNR | 120 |
RPQGASTITQ QVAKNFLLTN EVSFSRKIKE ALLAMRIERA YSKDKILELY LNEIYLGLGA | 180 |
YGVAAASLVY FDKSVNELTV AEAAYLAAMP KAPGALHPVR NHDRAVERRN YVIDRLLENG | 240 |
WIKQADADKA RKDPLIVTSR TNGAHIFAGE YFAEEVRRDI FERYGEKKLY EGGLSVHTTL | 300 |
DPKIQIEARK TMVAGLVTYD EAQGWRGALS KLDITGDWGV RLADLKSLSD VAPWRMAVVL | 360 |
ETSDQSARIG FQPGRELGGA VAKERQTGIV TLDGVRWAKA ASGPAKGKTP NAVSQVLSPG | 420 |
DIIYADPLIG KDGNPVDGQY RLRQLPEVSG AMVVMDPWTG RVLAMVGGFS FDQSQFNRAT | 480 |
QAYRQPGSSF KPIVYSSALD NGYTPSTVVV DAPIEIDQGQ GAGVWRPENY SAGKYQGPTT | 540 |
LRNALRLSLN TVTVRLAQDI GMPLIGEYAK RFGVYDELPN YLSYALGAGE TTVMRMVTAY | 600 |
SMFDNGGRRV KPTLIDRIQD RYGHTIFKHD ARECRGCDAP GGWKNQPEPQ LVDRREQVLD | 660 |
PMTAYQITSM MEGVVQAGTA TVVKEVGKPI AGKTGTTNDQ KDAWFVGFSP DIVVGIYMGY | 720 |
DKPRNLGRTA TGGHLAAPIA RDFLKLALAD KPAVPFKVPA GIKLIRVDSK TGMRAGPGDS | 780 |
GRTILEAFKP GTAPPDNYSV IGVADADGRL QQPSPDADRS LFRPGTGGLY | 830 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.79 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT51(58-236)
MRLLVRFLGF LFAAGTVVFL VGVAATAGLI WHFSKDLPDY SQLQDYEPPV MTRVHASDGA | 60 |
LLGEYSKERR LYLPIQAVPK LVINAFLAAE DKNFYEHGGI DYSGMARAAV LYAQNYGSNR | 120 |
RPQGASTITQ QVAKNFLLTN EVSFSRKIKE ALLAMRIERA YSKDKILELY LNEIYLGLGA | 180 |
YGVAAASLVY FDKSVNELTV AEAAYLAAMP KAPGALHPVR NHDRAVERRN YVIDRLLENG | 240 |
WIKQADADKA RKDPLIVTSR TNGAHIFAGE YFAEEVRRDI FERYGEKKLY EGGLSVHTTL | 300 |
DPKIQIEARK TMVAGLVTYD EAQGWRGALS KLDITGDWGV RLADLKSLSD VAPWRMAVVL | 360 |
ETSDQSARIG FQPGRELGGA VAKERQTGIV TLDGVRWAKA ASGPAKGKTP NAVSQVLSPG | 420 |
DIIYADPLIG KDGNPVDGQY RLRQLPEVSG AMVVMDPWTG RVLAMVGGFS FDQSQFNRAT | 480 |
QAYRQPGSSF KPIVYSSALD NGYTPSTVVV DAPIEIDQGQ GAGVWRPENY SAGKYQGPTT | 540 |
LRNALRLSLN TVTVRLAQDI GMPLIGEYAK RFGVYDELPN YLSYALGAGE TTVMRMVTAY | 600 |
SMFDNGGRRV KPTLIDRIQD RYGHTIFKHD ARECRGCDAP GGWKNQPEPQ LVDRREQVLD | 660 |
PMTAYQITSM MEGVVQAGTA TVVKEVGKPI AGKTGTTNDQ KDAWFVGFSP DIVVGIYMGY | 720 |
DKPRNLGRTA TGGHLAAPIA RDFLKLALAD KPAVPFKVPA GIKLIRVDSK TGMRAGPGDS | 780 |
GRTILEAFKP GTAPPDNYSV IGVADADGRL QQPSPDADRS LFRPGTGGLY | 830 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.