CAZyme3D

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Entry ID

Information for CAZyme ID: SHG41007.1

Basic Information

GenBank IDSHG41007.1
FamilyGH130
Sequence Length432
UniProt IDA0A1M5JKB9(100,100)Download
Average pLDDT?93.03
CAZy50 ID78142
CAZy50 RepNo, QEL26229.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1437360
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium erythrophlei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPEFPFLNRQ  ALHLRPDPTR  VIVRPFKPAT  EPRDLNPTDK  TRANHIVERV  LALDPEAADR60
QLADVLENFL  GRHRNLLQTF  EARAAEMEAA  LADHVAFTQV  QRQLVGAYFL  NEYSFEASAL120
FNPSIVVHPD  QSGTPGGSLR  FILSLRAVGE  GHVSSLTFRS  GLIAADGTVN  VDPTARLASS180
PDIVRLTSGA  GGDDIDVTFT  AGEDISERVI  FPVTEAQSNG  IEDARFVQFS  GAGQKVYYAT240
YTAYSGRAIR  SELIETSDFV  SFRLSALKGS  AARNKGMALF  PQKIDGKYAM  IARQDNENLY300
LIYSDDLYTW  DGGQPILKPR  YPWEFVQIGN  CGSPIELDEG  WLLLTHGVGP  VRKYSIGAAL360
LDKKDPSKVL  ARLREPLLRP  DPSEREGYVP  NVVYTCGAMR  HRDKIIFPYA  VSDTFCNFAT420
IEIDSLIAAM  DR432

Predicted 3D structure by AlphaFold2 with pLDDT = 93.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(206-429)

MPEFPFLNRQ  ALHLRPDPTR  VIVRPFKPAT  EPRDLNPTDK  TRANHIVERV  LALDPEAADR60
QLADVLENFL  GRHRNLLQTF  EARAAEMEAA  LADHVAFTQV  QRQLVGAYFL  NEYSFEASAL120
FNPSIVVHPD  QSGTPGGSLR  FILSLRAVGE  GHVSSLTFRS  GLIAADGTVN  VDPTARLASS180
PDIVRLTSGA  GGDDIDVTFT  AGEDISERVI  FPVTEAQSNG  IEDARFVQFS  GAGQKVYYAT240
YTAYSGRAIR  SELIETSDFV  SFRLSALKGS  AARNKGMALF  PQKIDGKYAM  IARQDNENLY300
LIYSDDLYTW  DGGQPILKPR  YPWEFVQIGN  CGSPIELDEG  WLLLTHGVGP  VRKYSIGAAL360
LDKKDPSKVL  ARLREPLLRP  DPSEREGYVP  NVVYTCGAMR  HRDKIIFPYA  VSDTFCNFAT420
IEIDSLIAAM  DR432

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help