CAZyme3D

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Entry ID

Information for CAZyme ID: SEA33375.1

Basic Information

GenBank IDSEA33375.1
FamilyGH6
Sequence Length321
UniProt IDA0A1H4ABJ2(100,100)Download
Average pLDDT?91.96
CAZy50 ID49782
CAZy50 RepNo, WAB81095.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1798223
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia sp. 21MFCrub1.1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIAILIGAAL  VSAALASAPA  APAAHADDSP  FGSRLYVDPY  SDARREYDAL  TAQGDTAAAA60
LIGQIASQPT  AVWLGDWYTP  TLLQSVIQRH  LRAAAAQGAT  PVFVTYAVPD  RDCGGYSAGG120
FTADQYLDWT  RQVAAALAGS  GAVVLVEPDS  LAMLSSAKCA  GVAATRLPLL  KSAVGILASA180
GLATYLDGGN  ARWLTPDAQA  AYLKAAGIAD  ARGFFTNVSN  FDATQTERDY  AGKISSRVGW240
KHFVIDVSRN  GNGWTGTWCN  PPGAALGQNP  QINASTTSKL  DALLWVKHPG  ASDGPCNGGP300
AAGAWFESGA  EALVLGRTAM  G321

Predicted 3D structure by AlphaFold2 with pLDDT = 91.96 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH6(48-297)

MIAILIGAAL  VSAALASAPA  APAAHADDSP  FGSRLYVDPY  SDARREYDAL  TAQGDTAAAA60
LIGQIASQPT  AVWLGDWYTP  TLLQSVIQRH  LRAAAAQGAT  PVFVTYAVPD  RDCGGYSAGG120
FTADQYLDWT  RQVAAALAGS  GAVVLVEPDS  LAMLSSAKCA  GVAATRLPLL  KSAVGILASA180
GLATYLDGGN  ARWLTPDAQA  AYLKAAGIAD  ARGFFTNVSN  FDATQTERDY  AGKISSRVGW240
KHFVIDVSRN  GNGWTGTWCN  PPGAALGQNP  QINASTTSKL  DALLWVKHPG  ASDGPCNGGP300
AAGAWFESGA  EALVLGRTAM  G321

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help