CAZyme3D

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Entry ID

Information for CAZyme ID: SDV16485.1

Basic Information

GenBank IDSDV16485.1
FamilyGH102
Sequence Length394
UniProt IDA0A1H2PGN9(100,100)Download
Average pLDDT?88.15
CAZy50 ID86704
CAZy50 RepNo, QZX85945.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID95300
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas vancouverensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNSRFKAWRH  SLAWTLPMVA  LLAGCTGGDN  NKPKTHALAT  YSSATWEALP  AVSDTDLVAG60
FGSWRSACTR  LKADPVWGAT  CAAAANVPQT  ASDIRGFLKQ  NLDVYGLRAA  DNKADGLITG120
YYEPVYPGSL  TQTSVANVPV  YGVPEDMIIV  SLDSLYPELK  GKRLRGRLEG  RVLKPYDDAA180
TIESKGVKAP  VVAWLTDPMN  LQFLQIQGSG  RIQLDNGRQL  RIAYADQNGH  PYRPIGRWLV240
EQGELKKEDV  TMGAISDWAK  ANPTRIPELL  GSNPSYVFFT  RNPDSNEGPR  GSLNVPLTAG300
YSAAVDRKVI  PLGSLLWLST  TKPDGTALVR  PVAAQDTGGA  ITGEVRADLF  WGTGDAAGKL360
AGDMKQQGQI  WMLWPKGAAL  PQVPQVADAQ  KTTP394

Predicted 3D structure by AlphaFold2 with pLDDT = 88.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(127-279)

MNSRFKAWRH  SLAWTLPMVA  LLAGCTGGDN  NKPKTHALAT  YSSATWEALP  AVSDTDLVAG60
FGSWRSACTR  LKADPVWGAT  CAAAANVPQT  ASDIRGFLKQ  NLDVYGLRAA  DNKADGLITG120
YYEPVYPGSL  TQTSVANVPV  YGVPEDMIIV  SLDSLYPELK  GKRLRGRLEG  RVLKPYDDAA180
TIESKGVKAP  VVAWLTDPMN  LQFLQIQGSG  RIQLDNGRQL  RIAYADQNGH  PYRPIGRWLV240
EQGELKKEDV  TMGAISDWAK  ANPTRIPELL  GSNPSYVFFT  RNPDSNEGPR  GSLNVPLTAG300
YSAAVDRKVI  PLGSLLWLST  TKPDGTALVR  PVAAQDTGGA  ITGEVRADLF  WGTGDAAGKL360
AGDMKQQGQI  WMLWPKGAAL  PQVPQVADAQ  KTTP394

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help