Information for CAZyme ID: SDV16485.1
Basic Information
GenBank ID | SDV16485.1 |
Family | GH102 |
Sequence Length | 394 |
UniProt ID | A0A1H2PGN9(100,100)![]() |
Average pLDDT? | 88.15 |
CAZy50 ID | 86704 |
CAZy50 Rep | No, QZX85945.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 95300 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Pseudomonadales |
Family | Pseudomonadaceae |
Genus | Pseudomonas |
Species | Pseudomonas vancouverensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNSRFKAWRH SLAWTLPMVA LLAGCTGGDN NKPKTHALAT YSSATWEALP AVSDTDLVAG | 60 |
FGSWRSACTR LKADPVWGAT CAAAANVPQT ASDIRGFLKQ NLDVYGLRAA DNKADGLITG | 120 |
YYEPVYPGSL TQTSVANVPV YGVPEDMIIV SLDSLYPELK GKRLRGRLEG RVLKPYDDAA | 180 |
TIESKGVKAP VVAWLTDPMN LQFLQIQGSG RIQLDNGRQL RIAYADQNGH PYRPIGRWLV | 240 |
EQGELKKEDV TMGAISDWAK ANPTRIPELL GSNPSYVFFT RNPDSNEGPR GSLNVPLTAG | 300 |
YSAAVDRKVI PLGSLLWLST TKPDGTALVR PVAAQDTGGA ITGEVRADLF WGTGDAAGKL | 360 |
AGDMKQQGQI WMLWPKGAAL PQVPQVADAQ KTTP | 394 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.15 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH102(127-279)
MNSRFKAWRH SLAWTLPMVA LLAGCTGGDN NKPKTHALAT YSSATWEALP AVSDTDLVAG | 60 |
FGSWRSACTR LKADPVWGAT CAAAANVPQT ASDIRGFLKQ NLDVYGLRAA DNKADGLITG | 120 |
YYEPVYPGSL TQTSVANVPV YGVPEDMIIV SLDSLYPELK GKRLRGRLEG RVLKPYDDAA | 180 |
TIESKGVKAP VVAWLTDPMN LQFLQIQGSG RIQLDNGRQL RIAYADQNGH PYRPIGRWLV | 240 |
EQGELKKEDV TMGAISDWAK ANPTRIPELL GSNPSYVFFT RNPDSNEGPR GSLNVPLTAG | 300 |
YSAAVDRKVI PLGSLLWLST TKPDGTALVR PVAAQDTGGA ITGEVRADLF WGTGDAAGKL | 360 |
AGDMKQQGQI WMLWPKGAAL PQVPQVADAQ KTTP | 394 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.