Information for CAZyme ID: SDO33715.1
Basic Information
| GenBank ID | SDO33715.1 |
| Family | CBM48, GH13_11 |
| Sequence Length | 722 |
| UniProt ID | A0A1H0IQR5(100,100) |
| Average pLDDT? | 90.15 |
| CAZy50 ID | 28020 |
| CAZy50 Rep | No, WIB36209.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1090615 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Nakamurellales |
| Family | Nakamurellaceae |
| Genus | Nakamurella |
| Species | Nakamurella panacisegetis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MESTGTGDLK GAGAALDASP AWRFVSVGGL ALFASLDQMA EYPLTRHDRS LPHPLGVTVR | 60 |
| DGGANVAVYT GTADLVEVCV FDADGNETRT PLCDRTGHVF HGLVPGMTAG TRYALRVHGE | 120 |
| WNPKIGLRHN EHKLLLDPHA TAVCGEYTWG QAVFAHDMNN PEVKDETDAA GSTPLCVVTD | 180 |
| NQFDWADDAP PGTPLSETIV YEVHVKGFTQ LHPDVPEEIC GTYAGLGHPA AIKHLTDLGV | 240 |
| TAVELLPVHQ FVQDDHLVRK GLRNYWGYNS IAFLAPHGEY SSVGDAGGQV GEFKSMVKAL | 300 |
| HAAGLEVILD VVYNHTAEGN DMGPSLSLKG IDNAAYYRLV EGDEAHYFDT TGTGNSLNVS | 360 |
| HPAALGLIMD SLRYWVTEMH VDGFRFDLAT TLTRQGGDTS LHSAFTDMIA QDPILAPVKM | 420 |
| IAEPWDTAGY QVGGFPADWS EWNGKFRDDV RAFWGGQDSL LGTLTQRVLG SPDVYESDRR | 480 |
| SPNAGVGFVT AHDGFTLHDL TSYNVKHNSA NGEDNNDGES DNKSCNNGAE GPTEDEAVTI | 540 |
| RRARAVRNLL ATLLLSAGVP MILGGDEMGR TQGGNNNAYC QDNEISWFHW DAVDSELVEF | 600 |
| TRTLIRLRRD NPALRPVWFR YAPAEGVRDW VRVLRSDGGE FDDQDWSDPA ARSVMFVVGH | 660 |
| DGADAFALLL NAAENGVEFA VPAAPHGEWE LASSSDPEQQ VLSPVTTLTA RDSSFTLLRS | 720 |
| AR | 722 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.15 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM48(54-142)+GH13_11(221-571)
| MESTGTGDLK GAGAALDASP AWRFVSVGGL ALFASLDQMA EYPLTRHDRS LPHPLGVTVR | 60 |
| DGGANVAVYT GTADLVEVCV FDADGNETRT PLCDRTGHVF HGLVPGMTAG TRYALRVHGE | 120 |
| WNPKIGLRHN EHKLLLDPHA TAVCGEYTWG QAVFAHDMNN PEVKDETDAA GSTPLCVVTD | 180 |
| NQFDWADDAP PGTPLSETIV YEVHVKGFTQ LHPDVPEEIC GTYAGLGHPA AIKHLTDLGV | 240 |
| TAVELLPVHQ FVQDDHLVRK GLRNYWGYNS IAFLAPHGEY SSVGDAGGQV GEFKSMVKAL | 300 |
| HAAGLEVILD VVYNHTAEGN DMGPSLSLKG IDNAAYYRLV EGDEAHYFDT TGTGNSLNVS | 360 |
| HPAALGLIMD SLRYWVTEMH VDGFRFDLAT TLTRQGGDTS LHSAFTDMIA QDPILAPVKM | 420 |
| IAEPWDTAGY QVGGFPADWS EWNGKFRDDV RAFWGGQDSL LGTLTQRVLG SPDVYESDRR | 480 |
| SPNAGVGFVT AHDGFTLHDL TSYNVKHNSA NGEDNNDGES DNKSCNNGAE GPTEDEAVTI | 540 |
| RRARAVRNLL ATLLLSAGVP MILGGDEMGR TQGGNNNAYC QDNEISWFHW DAVDSELVEF | 600 |
| TRTLIRLRRD NPALRPVWFR YAPAEGVRDW VRVLRSDGGE FDDQDWSDPA ARSVMFVVGH | 660 |
| DGADAFALLL NAAENGVEFA VPAAPHGEWE LASSSDPEQQ VLSPVTTLTA RDSSFTLLRS | 720 |
| AR | 722 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.