CAZyme3D

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Entry ID

Information for CAZyme ID: SDN89029.1

Basic Information

GenBank IDSDN89029.1
FamilyPL7_1
Sequence Length222
UniProt IDA0A1H0F3C0(100,100)Download
Average pLDDT?97.33
CAZy50 ID175218
CAZy50 RepNo, SOP95413.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID702115
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas arsenicoxydans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIDLATWNLS  VPVGNPPYTV  DTPKLVKGFK  DQYFHSDTGT  LFFWAPVTGS  KTENAKYPRT60
ELRETYSNGT  LRNWLYPDAD  NLLHATLAVN  QVPSSGKVVI  GQIHAYESQK  PLVKLEYQYK120
TSTSTGNIVA  KVRMHPDDGE  GRVITIATGV  KLDQEFSYLI  HLSRGGALGI  SAAGNQWDTD180
ISKTWRDKPL  YFKAGVYVQD  HTGYTSEGAK  VTFSKLDIDH  DK222

Predicted 3D structure by AlphaFold2 with pLDDT = 97.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL7_1(2-220)

MIDLATWNLS  VPVGNPPYTV  DTPKLVKGFK  DQYFHSDTGT  LFFWAPVTGS  KTENAKYPRT60
ELRETYSNGT  LRNWLYPDAD  NLLHATLAVN  QVPSSGKVVI  GQIHAYESQK  PLVKLEYQYK120
TSTSTGNIVA  KVRMHPDDGE  GRVITIATGV  KLDQEFSYLI  HLSRGGALGI  SAAGNQWDTD180
ISKTWRDKPL  YFKAGVYVQD  HTGYTSEGAK  VTFSKLDIDH  DK222

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help