CAZyme3D

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Entry ID

Information for CAZyme ID: SDF29322.1

Basic Information

GenBank IDSDF29322.1
FamilyGH13_7
Sequence Length446
UniProt IDA0A1G7JWR9(100,100)Download
Average pLDDT?95.98
CAZy50 ID77033
CAZy50 RepNo, ADW68393.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID392734
KingdomBacteria
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusTerriglobus
SpeciesTerriglobus roseus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAVMMQGFYW  DCAKEENRLG  EWWNYVAEKI  PSLGKQGIGF  DAIWLPPISK  GASPGTMGYD60
PYDYFDLGDF  EQKGSVKTSF  GNRAELESLI  KTIHENGMGA  IADMVINHNS  GADEEEENPL120
DGQKRWTKFN  PKSGKFPRNW  DCFHPSRYEK  VMLEGEQFAG  FPHLCHRNPK  VYAAMYEYAR180
LIIEDLDFDG  FRFDFVKGFG  AWMIGLLAKY  QYQKKDNPNF  SPFVVGEYWS  GPDDIHDWLD240
AVSTLTDSQI  AAFDFPLRYK  LKDVCDTLNY  DLRNLTDGTS  VSAARPFNAV  TFVDNHDMND300
NFVTNDKMLG  YSFILTQDGY  PCVFWRDYYN  YELARPNTPN  GIDALVQAHH  KHAGGESCIL360
HADPDLYISQ  RGGTEDQSGL  IYVLNNLGNQ  WSGTTVQTKW  PNTRFIPVAW  DGHDQAHPDE420
RSTDEEGNGE  FPAPPRGYCV  YAPIFE446

Predicted 3D structure by AlphaFold2 with pLDDT = 95.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_7(38-328)

MAVMMQGFYW  DCAKEENRLG  EWWNYVAEKI  PSLGKQGIGF  DAIWLPPISK  GASPGTMGYD60
PYDYFDLGDF  EQKGSVKTSF  GNRAELESLI  KTIHENGMGA  IADMVINHNS  GADEEEENPL120
DGQKRWTKFN  PKSGKFPRNW  DCFHPSRYEK  VMLEGEQFAG  FPHLCHRNPK  VYAAMYEYAR180
LIIEDLDFDG  FRFDFVKGFG  AWMIGLLAKY  QYQKKDNPNF  SPFVVGEYWS  GPDDIHDWLD240
AVSTLTDSQI  AAFDFPLRYK  LKDVCDTLNY  DLRNLTDGTS  VSAARPFNAV  TFVDNHDMND300
NFVTNDKMLG  YSFILTQDGY  PCVFWRDYYN  YELARPNTPN  GIDALVQAHH  KHAGGESCIL360
HADPDLYISQ  RGGTEDQSGL  IYVLNNLGNQ  WSGTTVQTKW  PNTRFIPVAW  DGHDQAHPDE420
RSTDEEGNGE  FPAPPRGYCV  YAPIFE446

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help