CAZyme3D

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Entry ID

Information for CAZyme ID: SDF26608.1

Basic Information

GenBank IDSDF26608.1
FamilyGH8
Sequence Length393
UniProt IDA0A1G7JNS7(100,100)Download
Average pLDDT?92.46
CAZy50 ID96287
CAZy50 RepNo, ADW69096.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID392734
KingdomBacteria
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusTerriglobus
SpeciesTerriglobus roseus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLGVRKGWRD  GFRRTAAVAI  ACVTLLSQTG  CRAEVPWPLW  QSYRAKFVDA  SGRVIDHDAN60
DRTTSEGMAY  GMFFALVTND  RPTFDKMLRW  TEDNLAGGDL  TARLPAWNWG  KSPEGQWKTL120
DANSAADADL  WMAYDLVEAG  RLWKDDRLAK  LGTVLANRIA  QSEVALVPGL  GTVLLPGPQG180
FHPDQNTFIL  NPSYTPPQVV  ARLRTESPQG  PWTPLLESYP  ALIQGSSPTG  YAMDWVTAGT240
AVRPSGTPAQ  LATGKTDFAP  VGGYESIRVY  LWLGMADKGT  NGVSDSLGYL  QGMGRYMQTA300
PTPPLQVDAT  GKILNPEGTV  GFSAAMIPFL  VSTGRMSQAK  TQNDRLTASK  DSATGLYGHS360
SLYYDQNLAL  FATGWQEGRF  RFDRDGKLRL  KWK393

Predicted 3D structure by AlphaFold2 with pLDDT = 92.46 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(37-375)

MLGVRKGWRD  GFRRTAAVAI  ACVTLLSQTG  CRAEVPWPLW  QSYRAKFVDA  SGRVIDHDAN60
DRTTSEGMAY  GMFFALVTND  RPTFDKMLRW  TEDNLAGGDL  TARLPAWNWG  KSPEGQWKTL120
DANSAADADL  WMAYDLVEAG  RLWKDDRLAK  LGTVLANRIA  QSEVALVPGL  GTVLLPGPQG180
FHPDQNTFIL  NPSYTPPQVV  ARLRTESPQG  PWTPLLESYP  ALIQGSSPTG  YAMDWVTAGT240
AVRPSGTPAQ  LATGKTDFAP  VGGYESIRVY  LWLGMADKGT  NGVSDSLGYL  QGMGRYMQTA300
PTPPLQVDAT  GKILNPEGTV  GFSAAMIPFL  VSTGRMSQAK  TQNDRLTASK  DSATGLYGHS360
SLYYDQNLAL  FATGWQEGRF  RFDRDGKLRL  KWK393

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help