CAZyme3D

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Entry ID

Information for CAZyme ID: SDD58521.1

Basic Information

GenBank IDSDD58521.1
FamilyGH13
Sequence Length1169
UniProt IDA0A1G6VY71(100,100)Download
Average pLDDT?87.81
CAZy50 ID1644
CAZy50 RepNo, SDS03674.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID675864
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusAuraticoccus
SpeciesAuraticoccus monumenti

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRTTPSTPA  PATRTRRLTA  LLGALALAAT  AAPLATLTAA  PAAADEDVVT  LVGSLQSELG60
CEADWEPACA  ATVLEPVRGS  TTTRSATFTV  PAGSWTFKVA  VGGSWDESHP  AADRPLVLTT120
PAEVEFVFDT  ETDAVDVRSA  ELPGSATAAD  RALVGDSLRE  AVTDEQFYFV  MADRFADGDP180
SNNTGGLPGG  RLDHGFDPTD  KGFYHGGDLA  GVLDRLDYIE  GLGTTAIWLT  PSFKNQPVQG240
AGDAASAGYH  GYWITDFTQI  DPHLGTNEEM  RELIDAAHAR  GMKVYFDIIT  NHTADVIDYA300
EGRYSYVSKE  ARPYTDAAGQ  PFDDADFAGT  DTFPEVDPAT  SFPYTPVFRE  PADETAKVPA360
WLNDPRLYHN  RGDSTFAGES  STHGDFVGLD  DLWTERSEVV  EGMIDIYSTW  ARFGIDGFRV420
DTVKHVNLEF  WQEFSPAVLE  AAREENEDFF  MFGEVYDANP  AYLSTFTTEG  ELQATIDFGF480
QARSVEAAAG  SVPTTGLRDF  FAADDYYTDT  DSNAYQLPTF  TGNHDMGRAA  MLLAAKGLSG540
DELLQRVGLT  NELMFTSRGQ  PVVYYGDEQG  FVGAGGDKDA  RQDMFATQVQ  QYADEPVLGG600
PAGSRDRYDT  SHPLYRQIRE  LSDLRAEHPA  LVDGAQVHRY  ASEDGLYAFA  RVDEEQREYL660
VVVNTSGTEQ  SASLRTWTPR  GTLRGVHGDD  ARLRADAEGR  VDVTVAPAST  EVYRSDRTLA720
RRKRAPQVLL  TSPDGRPGQP  AEQSVVGGRA  EIRAGSVEDV  AATAGFAWRE  AGTQEWTPLG780
VDDNAPYRVF  HDVRGLGAGT  LLEYRVVLRD  SSGNLSADSA  SAVVGDPVPV  DPGPGGPTGP840
VEQPDAVAVA  GDHNSEMGCP  ADWSPDCDAA  QLTLDAEDGI  WKGTFTLPAS  PHAYKAAIDR900
SWDENYGEGA  VRDGGNLSYT  APGTPVTFYY  DHATHWVTSD  AQGPIITAPG  SMQSELGCAA960
DWSPDCMRPW  LQDPDGDGTF  TWSSVEVPAG  SYDLKVAHGL  SWDESYGAGG  EADGGNVSFT1020
VAEEGLVTTV  SYVLATHEIR  VGTTRPGAEP  DLGVARAQWV  ESDLLAWPSD  ALPDLPVELL1080
DWRLHAAPDG  GMGIDAETLS  GSTSFRLTRD  PDGFPDDVLA  EHPELEGFVA  LRLNRASVRG1140
ARALRDGQLA  VALYDDLGRV  VDAGGVLLR1169

Predicted 3D structure by AlphaFold2 with pLDDT = 87.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_13(215-569)

MTRTTPSTPA  PATRTRRLTA  LLGALALAAT  AAPLATLTAA  PAAADEDVVT  LVGSLQSELG60
CEADWEPACA  ATVLEPVRGS  TTTRSATFTV  PAGSWTFKVA  VGGSWDESHP  AADRPLVLTT120
PAEVEFVFDT  ETDAVDVRSA  ELPGSATAAD  RALVGDSLRE  AVTDEQFYFV  MADRFADGDP180
SNNTGGLPGG  RLDHGFDPTD  KGFYHGGDLA  GVLDRLDYIE  GLGTTAIWLT  PSFKNQPVQG240
AGDAASAGYH  GYWITDFTQI  DPHLGTNEEM  RELIDAAHAR  GMKVYFDIIT  NHTADVIDYA300
EGRYSYVSKE  ARPYTDAAGQ  PFDDADFAGT  DTFPEVDPAT  SFPYTPVFRE  PADETAKVPA360
WLNDPRLYHN  RGDSTFAGES  STHGDFVGLD  DLWTERSEVV  EGMIDIYSTW  ARFGIDGFRV420
DTVKHVNLEF  WQEFSPAVLE  AAREENEDFF  MFGEVYDANP  AYLSTFTTEG  ELQATIDFGF480
QARSVEAAAG  SVPTTGLRDF  FAADDYYTDT  DSNAYQLPTF  TGNHDMGRAA  MLLAAKGLSG540
DELLQRVGLT  NELMFTSRGQ  PVVYYGDEQG  FVGAGGDKDA  RQDMFATQVQ  QYADEPVLGG600
PAGSRDRYDT  SHPLYRQIRE  LSDLRAEHPA  LVDGAQVHRY  ASEDGLYAFA  RVDEEQREYL660
VVVNTSGTEQ  SASLRTWTPR  GTLRGVHGDD  ARLRADAEGR  VDVTVAPAST  EVYRSDRTLA720
RRKRAPQVLL  TSPDGRPGQP  AEQSVVGGRA  EIRAGSVEDV  AATAGFAWRE  AGTQEWTPLG780
VDDNAPYRVF  HDVRGLGAGT  LLEYRVVLRD  SSGNLSADSA  SAVVGDPVPV  DPGPGGPTGP840
VEQPDAVAVA  GDHNSEMGCP  ADWSPDCDAA  QLTLDAEDGI  WKGTFTLPAS  PHAYKAAIDR900
SWDENYGEGA  VRDGGNLSYT  APGTPVTFYY  DHATHWVTSD  AQGPIITAPG  SMQSELGCAA960
DWSPDCMRPW  LQDPDGDGTF  TWSSVEVPAG  SYDLKVAHGL  SWDESYGAGG  EADGGNVSFT1020
VAEEGLVTTV  SYVLATHEIR  VGTTRPGAEP  DLGVARAQWV  ESDLLAWPSD  ALPDLPVELL1080
DWRLHAAPDG  GMGIDAETLS  GSTSFRLTRD  PDGFPDDVLA  EHPELEGFVA  LRLNRASVRG1140
ARALRDGQLA  VALYDDLGRV  VDAGGVLLR1169

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help