CAZyme3D

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Entry ID

Information for CAZyme ID: SCM58911.1

Basic Information

GenBank IDSCM58911.1
FamilyGH125
Sequence Length481
UniProt IDA0A1G4G8T6(100,100)Download
Average pLDDT?93.43
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1642646
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyDysgonomonadaceae
GenusPetrimonas
SpeciesPetrimonas mucosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTSRREFIKK  SALGFTAMAV  TPSWAVERND  RTVRSAKYVS  KRPPVSERKF  VSKAVEATIA60
RVKPKIKDEK  LAWMFENCFP  NTLDTTVNFS  VRDGMPDTFV  ITGDIDAMWL  RDSSAQVWPY120
LPLMKDDDRL  RQMIAGVIRR  QTQCILIDPY  ANAFYPEPNP  KGEWITDKTD  MKPEVHERKW180
EIDSLCYPIR  LAYHYWKLTN  DRSVFDGDWQ  KAMVSVLKTF  KEQQRKENHG  PYSFLRVTDR240
QLDTLNNGGM  GNPVNPVGLI  VSSFRPSDDA  TTFGFLIPSN  MFAVTSLRQL  EEISGLVTAD300
TRFAQECKSL  ADEVEAAIRK  YAVTHHPNHG  EIYAFEVDGF  GNYYLMDDAN  VPSLLAIPYL360
CGASADDAIY  RNTRNYVLSK  DNPYFFSGTA  GEGIGGPHVG  YDMIWPMSII  LRAMTSRSDD420
EIRHCIRMLR  DTDADTGFMH  ESFHKNNPAK  FTRSWFAWVN  TLFGELILKL  EKENKMDLLI480
C481

Predicted 3D structure by AlphaFold2 with pLDDT = 93.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(68-468)

MTSRREFIKK  SALGFTAMAV  TPSWAVERND  RTVRSAKYVS  KRPPVSERKF  VSKAVEATIA60
RVKPKIKDEK  LAWMFENCFP  NTLDTTVNFS  VRDGMPDTFV  ITGDIDAMWL  RDSSAQVWPY120
LPLMKDDDRL  RQMIAGVIRR  QTQCILIDPY  ANAFYPEPNP  KGEWITDKTD  MKPEVHERKW180
EIDSLCYPIR  LAYHYWKLTN  DRSVFDGDWQ  KAMVSVLKTF  KEQQRKENHG  PYSFLRVTDR240
QLDTLNNGGM  GNPVNPVGLI  VSSFRPSDDA  TTFGFLIPSN  MFAVTSLRQL  EEISGLVTAD300
TRFAQECKSL  ADEVEAAIRK  YAVTHHPNHG  EIYAFEVDGF  GNYYLMDDAN  VPSLLAIPYL360
CGASADDAIY  RNTRNYVLSK  DNPYFFSGTA  GEGIGGPHVG  YDMIWPMSII  LRAMTSRSDD420
EIRHCIRMLR  DTDADTGFMH  ESFHKNNPAK  FTRSWFAWVN  TLFGELILKL  EKENKMDLLI480
C481

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help