Information for CAZyme ID: SCG45490.1
Basic Information
| GenBank ID | SCG45490.1 |
| Family | CBM13, GH27 |
| Sequence Length | 609 |
| UniProt ID | A0A125Q0L1(100,100) |
| Average pLDDT? | 92.17 |
| CAZy50 ID | 50858 |
| CAZy50 Rep | No, BCJ74714.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 291594 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micromonosporales |
| Family | Micromonosporaceae |
| Genus | Micromonospora |
| Species | Micromonospora rifamycinica |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MHQRVIHPAT RRAAVLLAAV LLLMTGLVGT PAPQPAQAWD NGVADTPPMG WNSYDSFNWS | 60 |
| VTEADVRANA DYMGANLRQY GWQYIVVDWA WYFPGQHNGS PNQDANLQPR LRMDANGRLL | 120 |
| PDTTRFPSAA GTNGFKPLAD HVHAQGLKFG VHLMRGIPRQ AVADNVPILG TSCRANQIDA | 180 |
| GNSAAWLNLM WGLDMANPCA QAYLDSVFQL LAAWGVDFVK VDDIAAPTYR QAEVEGYRTA | 240 |
| IQRSGRPMVL SLSPGATPLS AGTHVQTNAH MWRIVNDLWD NWSSVDALFD QLRNWTPYRR | 300 |
| AGAWPDPDMI PIGRLSKYGP VGSPRYSNLS ADEQRTLMSL WVINRAPLMW GGNLVENRAA | 360 |
| ELALMTNSAV LAVDQRSANN RQLTGRTRQV WVADVPDGDD RYVALFNREG AAATVSLNLA | 420 |
| DLGIGSATAT DLWSGAALGT STGTFSRSLP AHGAGLYRLT PQTTTPTPTT YTLTARHSAK | 480 |
| LLDVSNAATT DGANVVQWTA NGQANQRWRF SDAGGGWSTV VSVNSGKCLD VYGGAGTTTD | 540 |
| GARVVQWTCN GGTNQQWRLQ DVGDGQVQLV ARHSGKCLDV LNAGLTDGAQ VVQWTCGTGT | 600 |
| NQQWRRTPV | 609 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.17 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH27(202-438)+CBM13(462-536)+CBM13(537-605)
| MHQRVIHPAT RRAAVLLAAV LLLMTGLVGT PAPQPAQAWD NGVADTPPMG WNSYDSFNWS | 60 |
| VTEADVRANA DYMGANLRQY GWQYIVVDWA WYFPGQHNGS PNQDANLQPR LRMDANGRLL | 120 |
| PDTTRFPSAA GTNGFKPLAD HVHAQGLKFG VHLMRGIPRQ AVADNVPILG TSCRANQIDA | 180 |
| GNSAAWLNLM WGLDMANPCA QAYLDSVFQL LAAWGVDFVK VDDIAAPTYR QAEVEGYRTA | 240 |
| IQRSGRPMVL SLSPGATPLS AGTHVQTNAH MWRIVNDLWD NWSSVDALFD QLRNWTPYRR | 300 |
| AGAWPDPDMI PIGRLSKYGP VGSPRYSNLS ADEQRTLMSL WVINRAPLMW GGNLVENRAA | 360 |
| ELALMTNSAV LAVDQRSANN RQLTGRTRQV WVADVPDGDD RYVALFNREG AAATVSLNLA | 420 |
| DLGIGSATAT DLWSGAALGT STGTFSRSLP AHGAGLYRLT PQTTTPTPTT YTLTARHSAK | 480 |
| LLDVSNAATT DGANVVQWTA NGQANQRWRF SDAGGGWSTV VSVNSGKCLD VYGGAGTTTD | 540 |
| GARVVQWTCN GGTNQQWRLQ DVGDGQVQLV ARHSGKCLDV LNAGLTDGAQ VVQWTCGTGT | 600 |
| NQQWRRTPV | 609 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.