CAZyme3D

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Entry ID

Information for CAZyme ID: SCG45490.1

Basic Information

GenBank IDSCG45490.1
FamilyCBM13, GH27
Sequence Length609
UniProt IDA0A125Q0L1(100,100)Download
Average pLDDT?92.17
CAZy50 ID50858
CAZy50 RepNo, BCJ74714.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID291594
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora rifamycinica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHQRVIHPAT  RRAAVLLAAV  LLLMTGLVGT  PAPQPAQAWD  NGVADTPPMG  WNSYDSFNWS60
VTEADVRANA  DYMGANLRQY  GWQYIVVDWA  WYFPGQHNGS  PNQDANLQPR  LRMDANGRLL120
PDTTRFPSAA  GTNGFKPLAD  HVHAQGLKFG  VHLMRGIPRQ  AVADNVPILG  TSCRANQIDA180
GNSAAWLNLM  WGLDMANPCA  QAYLDSVFQL  LAAWGVDFVK  VDDIAAPTYR  QAEVEGYRTA240
IQRSGRPMVL  SLSPGATPLS  AGTHVQTNAH  MWRIVNDLWD  NWSSVDALFD  QLRNWTPYRR300
AGAWPDPDMI  PIGRLSKYGP  VGSPRYSNLS  ADEQRTLMSL  WVINRAPLMW  GGNLVENRAA360
ELALMTNSAV  LAVDQRSANN  RQLTGRTRQV  WVADVPDGDD  RYVALFNREG  AAATVSLNLA420
DLGIGSATAT  DLWSGAALGT  STGTFSRSLP  AHGAGLYRLT  PQTTTPTPTT  YTLTARHSAK480
LLDVSNAATT  DGANVVQWTA  NGQANQRWRF  SDAGGGWSTV  VSVNSGKCLD  VYGGAGTTTD540
GARVVQWTCN  GGTNQQWRLQ  DVGDGQVQLV  ARHSGKCLDV  LNAGLTDGAQ  VVQWTCGTGT600
NQQWRRTPV609

Predicted 3D structure by AlphaFold2 with pLDDT = 92.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH27(202-438)+CBM13(462-536)+CBM13(537-605)

MHQRVIHPAT  RRAAVLLAAV  LLLMTGLVGT  PAPQPAQAWD  NGVADTPPMG  WNSYDSFNWS60
VTEADVRANA  DYMGANLRQY  GWQYIVVDWA  WYFPGQHNGS  PNQDANLQPR  LRMDANGRLL120
PDTTRFPSAA  GTNGFKPLAD  HVHAQGLKFG  VHLMRGIPRQ  AVADNVPILG  TSCRANQIDA180
GNSAAWLNLM  WGLDMANPCA  QAYLDSVFQL  LAAWGVDFVK  VDDIAAPTYR  QAEVEGYRTA240
IQRSGRPMVL  SLSPGATPLS  AGTHVQTNAH  MWRIVNDLWD  NWSSVDALFD  QLRNWTPYRR300
AGAWPDPDMI  PIGRLSKYGP  VGSPRYSNLS  ADEQRTLMSL  WVINRAPLMW  GGNLVENRAA360
ELALMTNSAV  LAVDQRSANN  RQLTGRTRQV  WVADVPDGDD  RYVALFNREG  AAATVSLNLA420
DLGIGSATAT  DLWSGAALGT  STGTFSRSLP  AHGAGLYRLT  PQTTTPTPTT  YTLTARHSAK480
LLDVSNAATT  DGANVVQWTA  NGQANQRWRF  SDAGGGWSTV  VSVNSGKCLD  VYGGAGTTTD540
GARVVQWTCN  GGTNQQWRLQ  DVGDGQVQLV  ARHSGKCLDV  LNAGLTDGAQ  VVQWTCGTGT600
NQQWRRTPV609

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help