CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: SCG41633.1

Basic Information

GenBank IDSCG41633.1
FamilyCBM13, GH54
Sequence Length524
UniProt IDA0A1C5H6S7(100,100)Download
Average pLDDT?86.50
CAZy50 ID62175
CAZy50 RepNo, QLJ96730.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID709883
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora zamorensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTPSPGGPG  KAPELIPRRH  RAQRLTALAG  ALVGVLVGIG  ATPGAPSPTA  EAAAAAPLAA60
AIEPGQSTPI  IGAASGRCLE  VPNSSTTNGT  QTQLWDCNGA  AGQTWTWTST  RQLQVYGNKC120
LDASGRGTTN  GTQAIIWDCN  GQNNQQWNVN  SNGTVTGVQS  GLCLDANGAA  TANGTKIILW180
ACNGGTNQQW  ASPTTPPPTN  PPTGSRPCDI  YASGGTPCIA  AHSTTRALYE  AYAGNLYQVR240
RSSDNTTRNI  GLTGTGGTAN  AATQDSFCSG  TTCVITVVFD  QSGRGNDLWY  QGSSVVPGSP300
QSRPATATSE  SLTVGGAKAY  SLYINPGNSY  WRDGHLTGVP  TGAAPEGMYM  VTSGTHVNSG360
CCFDYGNSET  TRKADAAGAM  DAINFGTQCW  FGGCSGSGPW  VQADLEWGLF  PGGSSSWNPN420
QRAFTSKFVT  ATLKNNGVSR  FAIKGSNAQS  GSLYTLWDGS  LPPGYSPMKK  QGAIILGSGG480
DCCKPDGGAN  LSAGTFYEGA  MVAGYPSDAT  ENAVQANVVT  AGYR524

Predicted 3D structure by AlphaFold2 with pLDDT = 86.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM13(67-191)+GH54(207-523)

MRTPSPGGPG  KAPELIPRRH  RAQRLTALAG  ALVGVLVGIG  ATPGAPSPTA  EAAAAAPLAA60
AIEPGQSTPI  IGAASGRCLE  VPNSSTTNGT  QTQLWDCNGA  AGQTWTWTST  RQLQVYGNKC120
LDASGRGTTN  GTQAIIWDCN  GQNNQQWNVN  SNGTVTGVQS  GLCLDANGAA  TANGTKIILW180
ACNGGTNQQW  ASPTTPPPTN  PPTGSRPCDI  YASGGTPCIA  AHSTTRALYE  AYAGNLYQVR240
RSSDNTTRNI  GLTGTGGTAN  AATQDSFCSG  TTCVITVVFD  QSGRGNDLWY  QGSSVVPGSP300
QSRPATATSE  SLTVGGAKAY  SLYINPGNSY  WRDGHLTGVP  TGAAPEGMYM  VTSGTHVNSG360
CCFDYGNSET  TRKADAAGAM  DAINFGTQCW  FGGCSGSGPW  VQADLEWGLF  PGGSSSWNPN420
QRAFTSKFVT  ATLKNNGVSR  FAIKGSNAQS  GSLYTLWDGS  LPPGYSPMKK  QGAIILGSGG480
DCCKPDGGAN  LSAGTFYEGA  MVAGYPSDAT  ENAVQANVVT  AGYR524

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help