CAZyme3D

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Entry ID

Information for CAZyme ID: SCG36893.1

Basic Information

GenBank IDSCG36893.1
FamilyCBM2, GH18
Sequence Length462
UniProt IDA0A1C5GT19(100,100)Download
Average pLDDT?86.76
CAZy50 ID45544
CAZy50 RepNo, ACU74848.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID47857
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora echinaurantiaca

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRSRSLVLS  LVTALTAAVG  AVWVALPAFA  AGATASFVKT  SDWGSGWEGK  YTITNAGGST60
VNGWSVSFDL  PAGTTVGSYW  DALLTSSGQR  HTFTNRSWNG  SIAPGASVSF  GFLGSGPGAP120
TNCLLNGAPC  GGGTPTTPPP  TTTPPPTTPP  PTTPPPTTPP  PTTGLPKHIL  TGYWHNFDNP180
AVELRLRDVP  AEYDLVAVAF  AEATATPGAV  TFAVDPGLSA  ALGGYTDADF  SADVRTLQSR240
GKKVIISVGG  ETGRVAVNDG  ASAAAFSDSV  YALIQRYGFD  GVDIDLENGL  NPTYMAQALR300
SLRSRVGANL  IIAMAPQTID  MQSPGTSYFK  LALDIKDILT  VVNTQFYNSG  AMLGCDNNAA360
YAQGTVNFIV  ALACMQLEAG  LRPDQVGLGL  PAGPGAAGGG  VVAPSVVNAA  LDCLSRGTNC420
GSFRPPRTYP  GLRGAMTWSV  NWDVTNNNAF  ARTVAPHLDT  LP462

Predicted 3D structure by AlphaFold2 with pLDDT = 86.76 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM2(34-130)+GH18(170-401)

MKRSRSLVLS  LVTALTAAVG  AVWVALPAFA  AGATASFVKT  SDWGSGWEGK  YTITNAGGST60
VNGWSVSFDL  PAGTTVGSYW  DALLTSSGQR  HTFTNRSWNG  SIAPGASVSF  GFLGSGPGAP120
TNCLLNGAPC  GGGTPTTPPP  TTTPPPTTPP  PTTPPPTTPP  PTTGLPKHIL  TGYWHNFDNP180
AVELRLRDVP  AEYDLVAVAF  AEATATPGAV  TFAVDPGLSA  ALGGYTDADF  SADVRTLQSR240
GKKVIISVGG  ETGRVAVNDG  ASAAAFSDSV  YALIQRYGFD  GVDIDLENGL  NPTYMAQALR300
SLRSRVGANL  IIAMAPQTID  MQSPGTSYFK  LALDIKDILT  VVNTQFYNSG  AMLGCDNNAA360
YAQGTVNFIV  ALACMQLEAG  LRPDQVGLGL  PAGPGAAGGG  VVAPSVVNAA  LDCLSRGTNC420
GSFRPPRTYP  GLRGAMTWSV  NWDVTNNNAF  ARTVAPHLDT  LP462

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help