Information for CAZyme ID: SCG17833.1
Basic Information
GenBank ID | SCG17833.1 |
Family | CBM35, GH43_30 |
Sequence Length | 438 |
UniProt ID | A0A1C5GDE4(100,100)![]() |
Average pLDDT? | 92.73 |
CAZy50 ID | 78628 |
CAZy50 Rep | No, ADD43586.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 47858 |
Kingdom | Bacteria |
Phylum | Actinomycetota |
Class | Actinomycetes |
Order | Micromonosporales |
Family | Micromonosporaceae |
Genus | Micromonospora |
Species | Micromonospora echinofusca |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRRGLVWLAA LLVAAPLLVS PGVAQAATTT PSLVIASDFP DPDVVKFGGT YYAYSTNNGH | 60 |
GNVPVATASS LTGAWTRRGD AMPTLGAWAN GGLTWAPDVS QRADGRYLLY YTARSRATGR | 120 |
QCIGAALATS PLGPFASVGT QPLVCNAGEG GDIDAASFTD STGLRHLLYK DDGNAIGQPT | 180 |
SLWLQRVAAD GVTLQGARVE LLRSGRAEEG GIIEAPVLTK VGAQYVLFYS LGGYGGDGYQ | 240 |
TSYATSTSLT GPYTKAYRSL MTTASLDSAV RGPGGADVVR EAGGDHIVFH GWINNYSARG | 300 |
MYVAALGWAG GNPVVRGSRV RYEAERGTLS NCAVRAAPNT SQGQVVAYID HADSWVDVTV | 360 |
FAPRAGGYRV HVAYAAGYGD AQHTLTVNGA NPKVVTYPDT GWDVWRQVGV DVTLNAGFNT | 420 |
LRFTHLSRWA ELDFVEVA | 438 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.73 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH43_30(38-304)+CBM35(322-436)
MRRGLVWLAA LLVAAPLLVS PGVAQAATTT PSLVIASDFP DPDVVKFGGT YYAYSTNNGH | 60 |
GNVPVATASS LTGAWTRRGD AMPTLGAWAN GGLTWAPDVS QRADGRYLLY YTARSRATGR | 120 |
QCIGAALATS PLGPFASVGT QPLVCNAGEG GDIDAASFTD STGLRHLLYK DDGNAIGQPT | 180 |
SLWLQRVAAD GVTLQGARVE LLRSGRAEEG GIIEAPVLTK VGAQYVLFYS LGGYGGDGYQ | 240 |
TSYATSTSLT GPYTKAYRSL MTTASLDSAV RGPGGADVVR EAGGDHIVFH GWINNYSARG | 300 |
MYVAALGWAG GNPVVRGSRV RYEAERGTLS NCAVRAAPNT SQGQVVAYID HADSWVDVTV | 360 |
FAPRAGGYRV HVAYAAGYGD AQHTLTVNGA NPKVVTYPDT GWDVWRQVGV DVTLNAGFNT | 420 |
LRFTHLSRWA ELDFVEVA | 438 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.