CAZyme3D

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Entry ID

Information for CAZyme ID: SCG17833.1

Basic Information

GenBank IDSCG17833.1
FamilyCBM35, GH43_30
Sequence Length438
UniProt IDA0A1C5GDE4(100,100)Download
Average pLDDT?92.73
CAZy50 ID78628
CAZy50 RepNo, ADD43586.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID47858
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora echinofusca

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRGLVWLAA  LLVAAPLLVS  PGVAQAATTT  PSLVIASDFP  DPDVVKFGGT  YYAYSTNNGH60
GNVPVATASS  LTGAWTRRGD  AMPTLGAWAN  GGLTWAPDVS  QRADGRYLLY  YTARSRATGR120
QCIGAALATS  PLGPFASVGT  QPLVCNAGEG  GDIDAASFTD  STGLRHLLYK  DDGNAIGQPT180
SLWLQRVAAD  GVTLQGARVE  LLRSGRAEEG  GIIEAPVLTK  VGAQYVLFYS  LGGYGGDGYQ240
TSYATSTSLT  GPYTKAYRSL  MTTASLDSAV  RGPGGADVVR  EAGGDHIVFH  GWINNYSARG300
MYVAALGWAG  GNPVVRGSRV  RYEAERGTLS  NCAVRAAPNT  SQGQVVAYID  HADSWVDVTV360
FAPRAGGYRV  HVAYAAGYGD  AQHTLTVNGA  NPKVVTYPDT  GWDVWRQVGV  DVTLNAGFNT420
LRFTHLSRWA  ELDFVEVA438

Predicted 3D structure by AlphaFold2 with pLDDT = 92.73 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_30(38-304)+CBM35(322-436)

MRRGLVWLAA  LLVAAPLLVS  PGVAQAATTT  PSLVIASDFP  DPDVVKFGGT  YYAYSTNNGH60
GNVPVATASS  LTGAWTRRGD  AMPTLGAWAN  GGLTWAPDVS  QRADGRYLLY  YTARSRATGR120
QCIGAALATS  PLGPFASVGT  QPLVCNAGEG  GDIDAASFTD  STGLRHLLYK  DDGNAIGQPT180
SLWLQRVAAD  GVTLQGARVE  LLRSGRAEEG  GIIEAPVLTK  VGAQYVLFYS  LGGYGGDGYQ240
TSYATSTSLT  GPYTKAYRSL  MTTASLDSAV  RGPGGADVVR  EAGGDHIVFH  GWINNYSARG300
MYVAALGWAG  GNPVVRGSRV  RYEAERGTLS  NCAVRAAPNT  SQGQVVAYID  HADSWVDVTV360
FAPRAGGYRV  HVAYAAGYGD  AQHTLTVNGA  NPKVVTYPDT  GWDVWRQVGV  DVTLNAGFNT420
LRFTHLSRWA  ELDFVEVA438

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help