CAZyme3D

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Entry ID

Information for CAZyme ID: SBV34638.1

Basic Information

GenBank IDSBV34638.1
FamilyPL29
Sequence Length559
UniProt IDA0A1Y5PX99(100,100)Download
Average pLDDT?93.79
CAZy50 ID57017
CAZy50 RepNo, QDH33229.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID310581
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingopyxis
Speciesuncultured Sphingopyxis sp.

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVSVDWRARL  ISLLALGAAL  IFPVQAQPGK  LPEILSDPAT  AAANPLPDFS  YAGYGFGLAP60
IPADAGTVIA  VTDHGAIPDD  GLDDTKAVLR  ALAAANAVKG  KVTLRFPKGR  TQITEVLRIT120
RSDIILDGAG  DGPGGSELWF  PRPLKLIDKS  HDYDELREYL  VREKKQQVEP  EHNIDYLFTE180
YTWSGGMIYV  APEGSRPVSY  DGSKDVRDPV  LANGVAGKQF  GRTLTIDDAS  KLKVGDVVQL240
QWFSVDGPKS  RILKSLYGDT  DLPIGSHHWT  FPNRPVVAQA  TRVAAIRGKT  VTLGDPLLHD300
VRADQPAVVA  DWRHLTNVGI  QNLRLQFPEA  PAFGHHLEQG  YNGIYMTGVF  DGWIRDLTID360
RADSGILTDN  AASLTISGIT  TTGDRRAHYS  VHVGAVHNVL  VKDLKVENPV  VHPVSINTRS420
TRSVFLRSVV  GRDAVIDQHS  GSNHQNLFDQ  VELHIDPQQG  KDGWHYQLWV  GGGAPYWKPG480
HGLYNTLWNA  KLVIPEKVPA  DATVTITSGL  EGPGERIVGL  HANRKIRVSY  TPTPYIEGTG540
QAVDAVPSLY  EYQLARRRR559

Predicted 3D structure by AlphaFold2 with pLDDT = 93.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL29(68-403)

MVSVDWRARL  ISLLALGAAL  IFPVQAQPGK  LPEILSDPAT  AAANPLPDFS  YAGYGFGLAP60
IPADAGTVIA  VTDHGAIPDD  GLDDTKAVLR  ALAAANAVKG  KVTLRFPKGR  TQITEVLRIT120
RSDIILDGAG  DGPGGSELWF  PRPLKLIDKS  HDYDELREYL  VREKKQQVEP  EHNIDYLFTE180
YTWSGGMIYV  APEGSRPVSY  DGSKDVRDPV  LANGVAGKQF  GRTLTIDDAS  KLKVGDVVQL240
QWFSVDGPKS  RILKSLYGDT  DLPIGSHHWT  FPNRPVVAQA  TRVAAIRGKT  VTLGDPLLHD300
VRADQPAVVA  DWRHLTNVGI  QNLRLQFPEA  PAFGHHLEQG  YNGIYMTGVF  DGWIRDLTID360
RADSGILTDN  AASLTISGIT  TTGDRRAHYS  VHVGAVHNVL  VKDLKVENPV  VHPVSINTRS420
TRSVFLRSVV  GRDAVIDQHS  GSNHQNLFDQ  VELHIDPQQG  KDGWHYQLWV  GGGAPYWKPG480
HGLYNTLWNA  KLVIPEKVPA  DATVTITSGL  EGPGERIVGL  HANRKIRVSY  TPTPYIEGTG540
QAVDAVPSLY  EYQLARRRR559

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help