CAZyme3D

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Entry ID

Information for CAZyme ID: SBP00538.1

Basic Information

GenBank IDSBP00538.1
FamilyGT35
Sequence Length860
UniProt IDA0A1M4ENY4(100,100)Download
Average pLDDT?92.25
CAZy50 ID4346
CAZy50 RepNo, CAM05389.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID93944
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyStreptosporangiaceae
GenusNonomuraea
SpeciesNonomuraea gerenzanensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRAIRRFTVR  TVLPAELAAL  GELVHNLRWS  WHPETMDLFA  EVDADLWEQV  GHDPVALLGA60
VTPARLSELA  ADRRFLRRLA  DAADDLREYI  TSPRWYQTLP  EAARAIAYFS  PEFGIAAALP120
QYSGGLGILA  GDHLKAASDL  GVPILAVGLL  YRHGYFTQSL  SPEGWQLEHY  PSLDAGGLPL180
SLLKDAEGTP  VKIRLALPDE  RVLHAQVWVA  QVGRVPLLLL  DSDVADNDAA  ARDVTDRLYG240
GGTDHRLMQE  LLLGVGGVRA  IRAYCKITGH  AEPEVFHTNE  GHAGFLGLER  IRELTEARMS300
FDEALEAVRA  GTVFTTHTPV  PAGIDRFPID  MIERHFGGAN  AWPTVPVERI  LALGAESDPG360
RFNMAVMGMR  LAQRVNGVSQ  LHGEVSREMF  KNLWPGFDLD  EVPIGSITNG  VHAPTWVGRE420
LMELAGREVP  SLLERARGWE  AIQKISDTDI  WEIRGVLRRR  LVEGARERLR  RSWRERGASD480
AELGWIDDAL  DPGVLTIGFA  RRVPSYKRLT  LMLRDPERLT  ELLLDPDKPV  QIVIAGKAHP540
ADEGGKKLIQ  QIVKFADRAD  VRHRIVFLPD  YDMALGQLMV  QGCDVWLNNP  LRPLEASGTS600
GMKSALNGGL  NLSIRDGWWD  EWYDGTNGWA  IPTADGVSDP  DRRDELEAAA  LYDLIEHEVS660
DRFYDRALDG  LPRRWMEMVK  HTLTSLGPKV  LAGRMLRDYV  VDLYNPAAAS  ARALSADSYA720
PAKAFAAWRV  RVTRAWPGVR  VEHAEAAGVG  DTPEVGAAIE  LHATIALGDL  EPDDVLVEAA780
YGKVGPHDEL  VHPSYTKLTV  RSVDDDGRAH  YTGTVPLDRT  GAFGYTVRVV  PSHPLLATPS840
ELGLIAVPEE  PAGMTNGTLR  860

Predicted 3D structure by AlphaFold2 with pLDDT = 92.25 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(242-631)

MRAIRRFTVR  TVLPAELAAL  GELVHNLRWS  WHPETMDLFA  EVDADLWEQV  GHDPVALLGA60
VTPARLSELA  ADRRFLRRLA  DAADDLREYI  TSPRWYQTLP  EAARAIAYFS  PEFGIAAALP120
QYSGGLGILA  GDHLKAASDL  GVPILAVGLL  YRHGYFTQSL  SPEGWQLEHY  PSLDAGGLPL180
SLLKDAEGTP  VKIRLALPDE  RVLHAQVWVA  QVGRVPLLLL  DSDVADNDAA  ARDVTDRLYG240
GGTDHRLMQE  LLLGVGGVRA  IRAYCKITGH  AEPEVFHTNE  GHAGFLGLER  IRELTEARMS300
FDEALEAVRA  GTVFTTHTPV  PAGIDRFPID  MIERHFGGAN  AWPTVPVERI  LALGAESDPG360
RFNMAVMGMR  LAQRVNGVSQ  LHGEVSREMF  KNLWPGFDLD  EVPIGSITNG  VHAPTWVGRE420
LMELAGREVP  SLLERARGWE  AIQKISDTDI  WEIRGVLRRR  LVEGARERLR  RSWRERGASD480
AELGWIDDAL  DPGVLTIGFA  RRVPSYKRLT  LMLRDPERLT  ELLLDPDKPV  QIVIAGKAHP540
ADEGGKKLIQ  QIVKFADRAD  VRHRIVFLPD  YDMALGQLMV  QGCDVWLNNP  LRPLEASGTS600
GMKSALNGGL  NLSIRDGWWD  EWYDGTNGWA  IPTADGVSDP  DRRDELEAAA  LYDLIEHEVS660
DRFYDRALDG  LPRRWMEMVK  HTLTSLGPKV  LAGRMLRDYV  VDLYNPAAAS  ARALSADSYA720
PAKAFAAWRV  RVTRAWPGVR  VEHAEAAGVG  DTPEVGAAIE  LHATIALGDL  EPDDVLVEAA780
YGKVGPHDEL  VHPSYTKLTV  RSVDDDGRAH  YTGTVPLDRT  GAFGYTVRVV  PSHPLLATPS840
ELGLIAVPEE  PAGMTNGTLR  860

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help