CAZyme3D

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Entry ID

Information for CAZyme ID: SAY49050.1

Basic Information

GenBank IDSAY49050.1
FamilyGH23
Sequence Length387
UniProt IDA0A181CBW3(100,100)Download
Average pLDDT?68.17
CAZy50 ID105101
CAZy50 RepNo, WEQ59511.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID215221
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusKomagataeibacter
SpeciesKomagataeibacter rhaeticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRDYKAGLVA  LAALALAGCT  AAPSGIVRGP  TVTGQSRIYV  APGTPDDPWE  PYIQEAATRF60
SVPTAWIRAV  MQQESGGRQY  LDGQLTTSGA  GAMGLMQLMP  ETYADMQAQY  ALGDDAYEPH120
DNIMAGTAYI  RQMYDRFGTP  DFLAAYNAGP  ERVAAWRQNG  DPLPAETMEY  VAAITPGLGP180
DLPPGLTGSP  ASGPTMLARA  DGADMNAAHA  PPAAATPSLS  RTADGCLRNA  DAAYDPTAPC240
LMDQDTPHGD  AGDDMKPSRT  VNDTDRAMAQ  DTVLPDRVVP  APVPDTAYRP  AVIQAVHYNA300
GAGGNGTWGV  QVGAFSTDAE  ARQALARTRL  LIGARPAALA  AVVMPVPAAS  GVLYRARLVG360
FGASEASDTC  QTLHAHAMAC  FTVAAHT387

Predicted 3D structure by AlphaFold2 with pLDDT = 68.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(61-174)

MRDYKAGLVA  LAALALAGCT  AAPSGIVRGP  TVTGQSRIYV  APGTPDDPWE  PYIQEAATRF60
SVPTAWIRAV  MQQESGGRQY  LDGQLTTSGA  GAMGLMQLMP  ETYADMQAQY  ALGDDAYEPH120
DNIMAGTAYI  RQMYDRFGTP  DFLAAYNAGP  ERVAAWRQNG  DPLPAETMEY  VAAITPGLGP180
DLPPGLTGSP  ASGPTMLARA  DGADMNAAHA  PPAAATPSLS  RTADGCLRNA  DAAYDPTAPC240
LMDQDTPHGD  AGDDMKPSRT  VNDTDRAMAQ  DTVLPDRVVP  APVPDTAYRP  AVIQAVHYNA300
GAGGNGTWGV  QVGAFSTDAE  ARQALARTRL  LIGARPAALA  AVVMPVPAAS  GVLYRARLVG360
FGASEASDTC  QTLHAHAMAC  FTVAAHT387

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help