CAZyme3D

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Entry ID

Information for CAZyme ID: RKX45983.1

Basic Information

GenBank IDRKX45983.1
FamilyPL39
Sequence Length247
UniProt IDA0A660R002(100,100)Download
Average pLDDT?92.64
CAZy50 ID35669
CAZy50 RepNo, EMI43857.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2026799
KingdomBacteria
PhylumVerrucomicrobiota
Class
Order
Family
Genus
SpeciesVerrucomicrobiota bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKQIVITCL  LAAAAVQAIE  KANYESYNGF  TTYSVPKLPA  KETHPSLWFK  AEEAAAMSAK60
KDQDEWASKL  WKQIAGSEFL  TMEFLPVPSA  SDGKKPIHKY  YGYMSQIAKY  AGFMIWMAED120
SAEKSKWITR  TTAALERAYD  GPAYEFDPKS  KGGPTDEIYL  GTWLQNYVAA  YDWVQPFLTN180
KQDKAIRERL  VRQTDWMGKN  IYNWVARPHN  HLSKPAWGVG  SAALALSSEK  NAYRWLGVAL240
AAGNDNT247

Predicted 3D structure by AlphaFold2 with pLDDT = 92.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MKKQIVITCL  LAAAAVQAIE  KANYESYNGF  TTYSVPKLPA  KETHPSLWFK  AEEAAAMSAK60
KDQDEWASKL  WKQIAGSEFL  TMEFLPVPSA  SDGKKPIHKY  YGYMSQIAKY  AGFMIWMAED120
SAEKSKWITR  TTAALERAYD  GPAYEFDPKS  KGGPTDEIYL  GTWLQNYVAA  YDWVQPFLTN180
KQDKAIRERL  VRQTDWMGKN  IYNWVARPHN  HLSKPAWGVG  SAALALSSEK  NAYRWLGVAL240
AAGNDNT247

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help