CAZyme3D

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Entry ID

Information for CAZyme ID: QQN75087.1

Basic Information

GenBank IDQQN75087.1
FamilyGH102
Sequence Length410
UniProt IDA0A7T7VUA0(100,100)Download
Average pLDDT?87.84
CAZy50 ID75030
CAZy50 RepNo, QCB53410.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2798724
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusCroceicoccus
SpeciesCroceicoccus sp. YJ47

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRALSVLPAM  IALSACAVVP  SVEGPPRAPP  PATPPAPVTQ  SPPEPAWPTP  PVRVGAEAVS60
ARDAGLYPGP  DIGALLASAG  YDTVREGEAD  AARRSFIESC  PALLSRSDSS  GIAADWTRAC120
AAAPGYAGSA  SRFFREFFET  AIVGGNDGFV  TGYFEPRIAG  VRNRQPGFDV  PVYGMPTDLV180
RQSDYAGGGR  APLGRYEDGR  FVPYFERAEI  VAGALDGRAP  VIAWAADAID  FFFLQIQGSG240
QLIAPDGSVL  RIGYAGQNGR  GYTAIGRTLR  ERGVFAPGEA  TMQGIVDWLR  ANPGEADAIM300
NENQSWVFFR  ELTGDGPLGA  LGVPVRPRVS  VAADPRFTPL  GAPVWIDAAN  DRADGLWIAQ360
DTGGAIKGAG  RFDTFWGAGE  MAKATAGAMS  SEARTLLLLP  KGTLARIAPR  410

Predicted 3D structure by AlphaFold2 with pLDDT = 87.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(158-310)

MRALSVLPAM  IALSACAVVP  SVEGPPRAPP  PATPPAPVTQ  SPPEPAWPTP  PVRVGAEAVS60
ARDAGLYPGP  DIGALLASAG  YDTVREGEAD  AARRSFIESC  PALLSRSDSS  GIAADWTRAC120
AAAPGYAGSA  SRFFREFFET  AIVGGNDGFV  TGYFEPRIAG  VRNRQPGFDV  PVYGMPTDLV180
RQSDYAGGGR  APLGRYEDGR  FVPYFERAEI  VAGALDGRAP  VIAWAADAID  FFFLQIQGSG240
QLIAPDGSVL  RIGYAGQNGR  GYTAIGRTLR  ERGVFAPGEA  TMQGIVDWLR  ANPGEADAIM300
NENQSWVFFR  ELTGDGPLGA  LGVPVRPRVS  VAADPRFTPL  GAPVWIDAAN  DRADGLWIAQ360
DTGGAIKGAG  RFDTFWGAGE  MAKATAGAMS  SEARTLLLLP  KGTLARIAPR  410

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help