CAZyme3D

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Entry ID

Information for CAZyme ID: QQN64200.1

Basic Information

GenBank IDQQN64200.1
FamilyGT51
Sequence Length735
UniProt IDA0A7T7V984(100,100)Download
Average pLDDT?78.69
CAZy50 ID16925
CAZy50 RepNo, BCP55952.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1355477
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium diazoefficiens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGSGKKKGGR  KEPLFGLPAA  LADLRLTAAD  RIPNAEDKPK  KSSSKRKSDT  SDDEPPRERK60
AQAIRGGARR  RSKSRMGAGL  GRLVYWGAVL  SLWGVIAVFG  VVIWVGAHLP  PIQSLEIPKR120
PPTIQIVGVD  GSLLAQRGEM  AGANVSLKDL  PPYLPKAFIA  IEDRRFYSHF  GIDPIGILRA180
LVTNVLHRGV  SQGGSTLTQQ  LAKNLFLTHE  RTMARKLQEA  ELAIWLERKH  SKNEILELYL240
NRVYFGSGAY  GVEAAAQKYF  GKPAKNVTIA  EAAMLAGLVK  SPSRLAPNRN  PEGAEQRAQI300
VLAAMADAKF  ITEAQAQASI  GHPSYNVKPV  GAGTVNYVAD  WIGEVLDDLV  GQIDQSIKVE360
TTIDPKLQAV  AEAAVIDELA  AKSVKFNVSQ  GALVAMTPDG  AVRAMVGGRN  YSESQYNRAV420
TAKRQPGSSF  KPFVYLTALE  QGLTPDTVRQ  DAPIEVKGWR  PENYTHEYFG  AVTLTQALAM480
SLNTVAIRLG  LEVGPKNVVR  TAHRLGISSK  LEPNASIALG  TSEVSVVEMV  GAYAPFANGG540
FAAVPHVVTR  IRTLDGKLLY  MRQPDEHNQV  IEPRYVGMMN  TMMRETLISG  TAKKAEIPGW600
QAAGKTGTSQ  DYRDAWFIGY  TANLVTGVWL  GNDDNSPTKK  ATGGGLPVEV  WTRFMRAAHE660
GVPVAALPNL  QSNWGPANLV  QISSQVSPPT  QAAPGPAPIS  NGGYRAPPPT  RANVRPEAAA720
GLDGWLMDRL  FGGNR735

Predicted 3D structure by AlphaFold2 with pLDDT = 78.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(131-305)

MGSGKKKGGR  KEPLFGLPAA  LADLRLTAAD  RIPNAEDKPK  KSSSKRKSDT  SDDEPPRERK60
AQAIRGGARR  RSKSRMGAGL  GRLVYWGAVL  SLWGVIAVFG  VVIWVGAHLP  PIQSLEIPKR120
PPTIQIVGVD  GSLLAQRGEM  AGANVSLKDL  PPYLPKAFIA  IEDRRFYSHF  GIDPIGILRA180
LVTNVLHRGV  SQGGSTLTQQ  LAKNLFLTHE  RTMARKLQEA  ELAIWLERKH  SKNEILELYL240
NRVYFGSGAY  GVEAAAQKYF  GKPAKNVTIA  EAAMLAGLVK  SPSRLAPNRN  PEGAEQRAQI300
VLAAMADAKF  ITEAQAQASI  GHPSYNVKPV  GAGTVNYVAD  WIGEVLDDLV  GQIDQSIKVE360
TTIDPKLQAV  AEAAVIDELA  AKSVKFNVSQ  GALVAMTPDG  AVRAMVGGRN  YSESQYNRAV420
TAKRQPGSSF  KPFVYLTALE  QGLTPDTVRQ  DAPIEVKGWR  PENYTHEYFG  AVTLTQALAM480
SLNTVAIRLG  LEVGPKNVVR  TAHRLGISSK  LEPNASIALG  TSEVSVVEMV  GAYAPFANGG540
FAAVPHVVTR  IRTLDGKLLY  MRQPDEHNQV  IEPRYVGMMN  TMMRETLISG  TAKKAEIPGW600
QAAGKTGTSQ  DYRDAWFIGY  TANLVTGVWL  GNDDNSPTKK  ATGGGLPVEV  WTRFMRAAHE660
GVPVAALPNL  QSNWGPANLV  QISSQVSPPT  QAAPGPAPIS  NGGYRAPPPT  RANVRPEAAA720
GLDGWLMDRL  FGGNR735

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help