CAZyme3D

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Entry ID

Information for CAZyme ID: QPH97292.1

Basic Information

GenBank IDQPH97292.1
FamilyCBM50, GH23
Sequence Length403
UniProt IDA0A7S9S6M3(100,100)Download
Average pLDDT?82.81
CAZy50 ID95263
CAZy50 RepNo, QCD52974.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID199
KingdomBacteria
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter concisus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAMLKIFLL  FACSTLLLAN  APEKSSYDTQ  VKILKELDID  ASFMKTSHYA  KMRQGIQNSQ60
VRTFTDALKN  GYMYIPMIKE  QIKKSGVPES  FFYLAMIESG  FSNHTVSNAK  ATGMWQFMEQ120
TAKIHGLKVG  QYTDERKDPV  ESTVAATNYL  RSLKNQFGKW  YLAAMAYNCG  DGALKKAIQK180
AGTDDLVTLL  DAEKKYLPVE  TRNFIIKILR  AAYIAKDADF  LISKESSLLN  INGGLRLTKV240
KVPGGTNLAQ  IGDSIGLSTK  KMKSNNPHLK  FVFTPPTLKD  YYVYIPENKK  QLFSDNFKPF300
NGKNNFYAYT  VKKGETLLSI  SKKTGVSHRA  IKDYNELSTN  AVSYNQKLII  PFSTQNKSHN360
YVVQTGDTIA  SLSKKFNVSE  KDIKDANSLA  SSNLNVGANI  VIP403

Predicted 3D structure by AlphaFold2 with pLDDT = 82.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(74-215)+CBM50(309-351)+CBM50(361-403)

MKAMLKIFLL  FACSTLLLAN  APEKSSYDTQ  VKILKELDID  ASFMKTSHYA  KMRQGIQNSQ60
VRTFTDALKN  GYMYIPMIKE  QIKKSGVPES  FFYLAMIESG  FSNHTVSNAK  ATGMWQFMEQ120
TAKIHGLKVG  QYTDERKDPV  ESTVAATNYL  RSLKNQFGKW  YLAAMAYNCG  DGALKKAIQK180
AGTDDLVTLL  DAEKKYLPVE  TRNFIIKILR  AAYIAKDADF  LISKESSLLN  INGGLRLTKV240
KVPGGTNLAQ  IGDSIGLSTK  KMKSNNPHLK  FVFTPPTLKD  YYVYIPENKK  QLFSDNFKPF300
NGKNNFYAYT  VKKGETLLSI  SKKTGVSHRA  IKDYNELSTN  AVSYNQKLII  PFSTQNKSHN360
YVVQTGDTIA  SLSKKFNVSE  KDIKDANSLA  SSNLNVGANI  VIP403

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help