CAZyme3D

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Entry ID

Information for CAZyme ID: QPH84123.1

Basic Information

GenBank IDQPH84123.1
FamilyCBM50, GH23
Sequence Length403
UniProt IDA0A1X0TWC7(100,100)Download
Average pLDDT?80.92
CAZy50 ID95263
CAZy50 RepNo, QCD52974.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID199
KingdomBacteria
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter concisus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAMLKIFLM  FACSTLLLAN  TPEKSSYDTQ  VKILKELDID  ASFMKTSHYA  KMRQGIKQSQ60
LETFTEALKN  GYMYIPMVKE  QIKKSGVPES  FFYLAMIESG  FSNHTVSNAK  ATGMWQFMEQ120
TARLHGLKVG  QYVDERKDPV  ESTIAATNYL  KSLKNQFGKW  YLAAMAYNCG  DGALKRAIQK180
AGTDDLVTLL  DAEKKYLPAE  TRNFVIKILR  AAYTAKDADF  LMSKDSSLLN  INGGLKLVKV240
KVPGGTNLAQ  IGDSIGLSTK  KMKNNNPHLK  FVFTPPTLKD  YYVYIPENKK  QLFAENFKPF300
NGKNNFYTYV  VKKGETLLSI  SKKTGVSHRA  IKDYNELSTN  AVSYNQKLII  PFSAQNKSQN360
YIVQTGDTIA  SLSKKFNVSE  KDLKDANSFA  SSNLNVGANI  VIP403

Predicted 3D structure by AlphaFold2 with pLDDT = 80.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(74-217)+CBM50(309-351)+CBM50(361-403)

MKAMLKIFLM  FACSTLLLAN  TPEKSSYDTQ  VKILKELDID  ASFMKTSHYA  KMRQGIKQSQ60
LETFTEALKN  GYMYIPMVKE  QIKKSGVPES  FFYLAMIESG  FSNHTVSNAK  ATGMWQFMEQ120
TARLHGLKVG  QYVDERKDPV  ESTIAATNYL  KSLKNQFGKW  YLAAMAYNCG  DGALKRAIQK180
AGTDDLVTLL  DAEKKYLPAE  TRNFVIKILR  AAYTAKDADF  LMSKDSSLLN  INGGLKLVKV240
KVPGGTNLAQ  IGDSIGLSTK  KMKNNNPHLK  FVFTPPTLKD  YYVYIPENKK  QLFAENFKPF300
NGKNNFYTYV  VKKGETLLSI  SKKTGVSHRA  IKDYNELSTN  AVSYNQKLII  PFSAQNKSQN360
YIVQTGDTIA  SLSKKFNVSE  KDLKDANSFA  SSNLNVGANI  VIP403

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help