CAZyme3D

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Entry ID

Information for CAZyme ID: QPH50219.1

Basic Information

GenBank IDQPH50219.1
FamilyGH50
Sequence Length749
UniProt IDA0A7S9L9T3(100,100)Download
Average pLDDT?92.67
CAZy50 ID24417
CAZy50 RepNo, AYC33831.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID47880
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fulva

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVRRTLPAVI  ALLLSPPLLA  GQQTLFSFVR  PASVVNVETV  DAGMPQYNAE  QTAQGEVLRR60
VVFNAAERPT  LRMSPQSGTW  DWSSGRYLTL  RLQNAMAWAL  TLDVTVKGND  GRTLTSRIDL120
PAGPAQTVMV  PLTARSPLQE  GLRAGPPMPW  SFSGQRVLLG  SSTGAVDLAQ  VAAVSLSIPA180
PKAAQSLLIE  RMGIQDDDQA  WQAAYHELID  AYGQSTRGTW  PEKVTSDEQL  KASAGREQQQ240
IKGWLAEREK  QPLDTYGGVT  AGTPFEATGF  FRTEKREGRW  YLVTPLGHPF  YSLGVNAVAA300
DGGRTYVAGR  EAMFKALPQQ  GEPLSAFYGE  GNNDDGNASS  QGRAFKKGRW  FDFYAANLER360
THAAPCQVAD  PQASAQPVNC  PPAKLDSARW  QRHTLDRLQA  WGFNTLGNWS  DAALVEQQRV420
PYTLPLSIVG  DYASISTGMD  WWGRMPDPFD  PRFAMATERA  VAIAARDHRD  DPWLIGYFAD480
NELAWAAPGD  DPKARYGLAY  GTLRLTTDVP  AKRAFLKQLR  DKYRNQEGLS  KAWGIELAAW540
ELMEDPGFEA  PLPSAEHPEI  ERDYQYFQQV  FAQTYFKTLS  DSLKWHAPNH  LLLGGRFAVS600
TPEAVKACAE  FCDVLSFNFY  TLKPQDGYDF  ARLAELDKPV  LVSEFQFGSR  DRGPFWPGPV660
EVAREEDRGP  AYGNFLKAAL  AQPMIVGAHW  FQYLDQPASG  RLLDAENGHL  GLVAITDVAY720
PGFVQAVRKS  NLEALDQLRT  RRSQAPASP749

Predicted 3D structure by AlphaFold2 with pLDDT = 92.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(73-733)

MVRRTLPAVI  ALLLSPPLLA  GQQTLFSFVR  PASVVNVETV  DAGMPQYNAE  QTAQGEVLRR60
VVFNAAERPT  LRMSPQSGTW  DWSSGRYLTL  RLQNAMAWAL  TLDVTVKGND  GRTLTSRIDL120
PAGPAQTVMV  PLTARSPLQE  GLRAGPPMPW  SFSGQRVLLG  SSTGAVDLAQ  VAAVSLSIPA180
PKAAQSLLIE  RMGIQDDDQA  WQAAYHELID  AYGQSTRGTW  PEKVTSDEQL  KASAGREQQQ240
IKGWLAEREK  QPLDTYGGVT  AGTPFEATGF  FRTEKREGRW  YLVTPLGHPF  YSLGVNAVAA300
DGGRTYVAGR  EAMFKALPQQ  GEPLSAFYGE  GNNDDGNASS  QGRAFKKGRW  FDFYAANLER360
THAAPCQVAD  PQASAQPVNC  PPAKLDSARW  QRHTLDRLQA  WGFNTLGNWS  DAALVEQQRV420
PYTLPLSIVG  DYASISTGMD  WWGRMPDPFD  PRFAMATERA  VAIAARDHRD  DPWLIGYFAD480
NELAWAAPGD  DPKARYGLAY  GTLRLTTDVP  AKRAFLKQLR  DKYRNQEGLS  KAWGIELAAW540
ELMEDPGFEA  PLPSAEHPEI  ERDYQYFQQV  FAQTYFKTLS  DSLKWHAPNH  LLLGGRFAVS600
TPEAVKACAE  FCDVLSFNFY  TLKPQDGYDF  ARLAELDKPV  LVSEFQFGSR  DRGPFWPGPV660
EVAREEDRGP  AYGNFLKAAL  AQPMIVGAHW  FQYLDQPASG  RLLDAENGHL  GLVAITDVAY720
PGFVQAVRKS  NLEALDQLRT  RRSQAPASP749

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help