CAZyme3D

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Entry ID

Information for CAZyme ID: QPG06081.1

Basic Information

GenBank IDQPG06081.1
FamilyGH8
Sequence Length343
UniProt IDA0A7S9HD99(100,100)Download
Average pLDDT?93.06
CAZy50 ID125169
CAZy50 RepNo, AXR07761.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2785918
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusSalinimonas
SpeciesSalinimonas marina

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTCYIVVLV  VAGMLLSACQ  ELREPTAFEN  DWQQYVEQFY  REGRIVDTGN  DFVSHSEGQG60
YGMLFAVQAG  DQKRFDAMWQ  WTRQTLQRED  HLFSWRYRPC  PQQSAACIDD  TNNASDGDIL120
IAWALLRASK  MWEVEQYRVQ  ALRIINSIEE  QLLVNAHGYT  VLLPGVEGFT  RPGAVQLNLS180
YWVFPAFEAF  YTLTDNPVWQ  DLIRSGHELL  TRVASQPPSL  PGDWMWLSEQ  ELTVEGAVNQ240
QYGFNACRIP  LHLTWQKTSD  PALLKPYLDF  WKRYKVVPAT  VNLINGEIAD  YRWSEGMQAI300
AQVVYFRTGQ  QQEMPLLHPG  PETDYFSASL  IMLSQLNLAE  GTL343

Predicted 3D structure by AlphaFold2 with pLDDT = 93.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(31-336)

MRTCYIVVLV  VAGMLLSACQ  ELREPTAFEN  DWQQYVEQFY  REGRIVDTGN  DFVSHSEGQG60
YGMLFAVQAG  DQKRFDAMWQ  WTRQTLQRED  HLFSWRYRPC  PQQSAACIDD  TNNASDGDIL120
IAWALLRASK  MWEVEQYRVQ  ALRIINSIEE  QLLVNAHGYT  VLLPGVEGFT  RPGAVQLNLS180
YWVFPAFEAF  YTLTDNPVWQ  DLIRSGHELL  TRVASQPPSL  PGDWMWLSEQ  ELTVEGAVNQ240
QYGFNACRIP  LHLTWQKTSD  PALLKPYLDF  WKRYKVVPAT  VNLINGEIAD  YRWSEGMQAI300
AQVVYFRTGQ  QQEMPLLHPG  PETDYFSASL  IMLSQLNLAE  GTL343

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help