Information for CAZyme ID: QPB85160.1
Basic Information
| GenBank ID | QPB85160.1 |
| Family | CBM5, CBM73, GH18 |
| Sequence Length | 848 |
| UniProt ID | A0A5S3V0U4(100,100) |
| Average pLDDT? | 87.37 |
| CAZy50 ID | 19903 |
| CAZy50 Rep | No, AXN14485.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 43658 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Pseudoalteromonadaceae |
| Genus | Pseudoalteromonas |
| Species | Pseudoalteromonas rubra |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKICCAAGLQ MIAVHSWAQG DTANYDCSAL AEWSSSTVYR KGDQVRAQAQ AYEAKWFNQN | 60 |
| ELPANNSDTF DVWRQLGQCI SGNAPVVTLV SPQDGAVLNK NDSAVFSANA SDQDGDLAQV | 120 |
| EFFVNNISIG ILSQPPYQLT WSAQLGMHTV SAVAVDAKGN LSTPATAGIT VRDDNGNVPP | 180 |
| ALTIDTPTNN QAFKVGDTVS LAVQATDTDG QVVQVEMWRD AQRLATLNTP PFRHDFVTVS | 240 |
| PGNKQLRVIA QDDKGATAEA SVTIEVSAAS SGGCTGLSTY RAGQGYQSGE LVAHNNRKYR | 300 |
| CDIAGWCSSS AAWAYEPGTG QHWQDAWSDM GICAIAPEIS FSQPNDNATL LRNQPTQIAV | 360 |
| SASDADGTIS QLELFADQTL LGSTAQNTLT VEWTPTNTGP VTLSAVATDN ESNQSQQTIQ | 420 |
| VTVTDQPLVV DLTAPTSGTQ YVLGNTISIK ANAQALSGQI SMVDFYANGV KVGSDTQAPY | 480 |
| EFNYAPATVG QHSIYATATS TSGDTASSPA ATVTVITPPV GKTHKLIGYW HNFVNPAGCP | 540 |
| IPLDQISDAW DIIDIAFAEN DRSSNGTVHF KPFEKDIRSN CPPIDPAKFK TDMQALQAQG | 600 |
| KIFVLSLGGA EGTITLNTDA DETNFVSSLT AIIQEWGFDG LDIDLESGSN LLHGSQIQAR | 660 |
| LPRAIKQIEQ NMGGDMVLTM APEHPYVHGG MIAYSGIWGA YIPLINELRD TLDLLHVQLY | 720 |
| NNGGLSNPYE PGSAPEGSVN MMVAHAKMLI EGFDLADGSR FMPLRDDQVA IGLPSGPQSA | 780 |
| NSGQAPIANI IAALDCLTKG TQCGTITPSQ PYPAFGGVMT WSINWDKFDG YNFSVPVGNK | 840 |
| LTEMNQGL | 848 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.37 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM5(31-73)+CBM73(280-328)+GH18(524-731)
| MKICCAAGLQ MIAVHSWAQG DTANYDCSAL AEWSSSTVYR KGDQVRAQAQ AYEAKWFNQN | 60 |
| ELPANNSDTF DVWRQLGQCI SGNAPVVTLV SPQDGAVLNK NDSAVFSANA SDQDGDLAQV | 120 |
| EFFVNNISIG ILSQPPYQLT WSAQLGMHTV SAVAVDAKGN LSTPATAGIT VRDDNGNVPP | 180 |
| ALTIDTPTNN QAFKVGDTVS LAVQATDTDG QVVQVEMWRD AQRLATLNTP PFRHDFVTVS | 240 |
| PGNKQLRVIA QDDKGATAEA SVTIEVSAAS SGGCTGLSTY RAGQGYQSGE LVAHNNRKYR | 300 |
| CDIAGWCSSS AAWAYEPGTG QHWQDAWSDM GICAIAPEIS FSQPNDNATL LRNQPTQIAV | 360 |
| SASDADGTIS QLELFADQTL LGSTAQNTLT VEWTPTNTGP VTLSAVATDN ESNQSQQTIQ | 420 |
| VTVTDQPLVV DLTAPTSGTQ YVLGNTISIK ANAQALSGQI SMVDFYANGV KVGSDTQAPY | 480 |
| EFNYAPATVG QHSIYATATS TSGDTASSPA ATVTVITPPV GKTHKLIGYW HNFVNPAGCP | 540 |
| IPLDQISDAW DIIDIAFAEN DRSSNGTVHF KPFEKDIRSN CPPIDPAKFK TDMQALQAQG | 600 |
| KIFVLSLGGA EGTITLNTDA DETNFVSSLT AIIQEWGFDG LDIDLESGSN LLHGSQIQAR | 660 |
| LPRAIKQIEQ NMGGDMVLTM APEHPYVHGG MIAYSGIWGA YIPLINELRD TLDLLHVQLY | 720 |
| NNGGLSNPYE PGSAPEGSVN MMVAHAKMLI EGFDLADGSR FMPLRDDQVA IGLPSGPQSA | 780 |
| NSGQAPIANI IAALDCLTKG TQCGTITPSQ PYPAFGGVMT WSINWDKFDG YNFSVPVGNK | 840 |
| LTEMNQGL | 848 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.