CAZyme3D

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Entry ID

Information for CAZyme ID: QOV95321.1

Basic Information

GenBank IDQOV95321.1
FamilyGH23
Sequence Length275
UniProt IDA0A7M2XEA9(100,100)Download
Average pLDDT?80.20
CAZy50 ID148648
CAZy50 RepNo, WDF73286.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2780074
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. ES2-1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRGAIAGAAQ  ATGTDFAYLM  AQAKLESSLD  PSARSRTSSA  SGLYQFTTGT  WLRTLEKHGA60
EHGLAWASDM  IRSGAASDPA  ARAQLLALRF  DPQVAATMAG  ELAGDNGDYL  SGVLGRQPDH120
AELYLAHFFG  AEGAGRFLTA  LGNDPSQSAA  ALLPSAAAAN  RSTFYDRSGS  PRSVSDVMSL180
IRNRMAAASE  GASGDEALQW  AASLGVTPAT  AQAQQFTGGP  IAREFQSAAA  GRGNPVPAAA240
SSMADTLKQA  FALNDGASAP  AHVRQAYGRL  SAMGL275

Predicted 3D structure by AlphaFold2 with pLDDT = 80.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(17-128)

MRGAIAGAAQ  ATGTDFAYLM  AQAKLESSLD  PSARSRTSSA  SGLYQFTTGT  WLRTLEKHGA60
EHGLAWASDM  IRSGAASDPA  ARAQLLALRF  DPQVAATMAG  ELAGDNGDYL  SGVLGRQPDH120
AELYLAHFFG  AEGAGRFLTA  LGNDPSQSAA  ALLPSAAAAN  RSTFYDRSGS  PRSVSDVMSL180
IRNRMAAASE  GASGDEALQW  AASLGVTPAT  AQAQQFTGGP  IAREFQSAAA  GRGNPVPAAA240
SSMADTLKQA  FALNDGASAP  AHVRQAYGRL  SAMGL275

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help