CAZyme3D

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Entry ID

Information for CAZyme ID: QOV35507.1

Basic Information

GenBank IDQOV35507.1
FamilyCBM2, GH18
Sequence Length607
UniProt IDA0A7M2SGM8(100,100)Download
Average pLDDT?90.41
CAZy50 ID28136
CAZy50 RepNo, DAA01336.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1413221
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces ferrugineus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRFRHRAAAG  FATLLLPLAG  LVGLASPAEA  AGSATATYAK  TQDWGSGFEG  RWTVKNTGTT60
ALTSWTVEWD  FPSGTSVTSA  WDADVTSSGT  HWTARNKSWN  GTLAPGASVS  FGFNGTGSGS120
PANCKLNGGS  CDGGSTEPGD  SAPSAPGTPT  ASAITNTSVR  LSWSAATDDK  GVKNYDVLRD180
GAKVATVTTT  SYTDTGLTAG  TDYSYTVQAR  DTADQTGPVS  GARAVRTTGG  TTEPPTGDKV240
KLGYFTEWGV  YGRNYHVKNL  VTSGSASKIT  HINYAFGNVK  NGQCTVDDTY  AAYDKAYTAD300
QSVSGTADTW  DQPLRGNFNQ  LRQLKAKYPH  IKVLYSFGGW  TYSGGFGQAA  QNAAAFAKSC360
KAVVEDPRWA  DVFDGIDIDW  EYPNACGLTC  DTSGPAAFGN  LMRALRSEFG  ENYLVTAAIT420
ADGSDGGKID  AADYGGAARY  VDWYNVMTYD  YFGAWDRTGP  TAPHSPLTSY  AGIPNPAFNS480
AAAIAKLKAK  GVQGGKLLLG  IGFYGRGWTG  VTQSAPGGTA  TGPATGTYEA  GIEDYKVLKT540
SCPATGTVGG  TAYAHCGSNW  WSYDTPATIG  TKMAWAKAQG  LGGAFFWEFS  GDTAGGELVS600
AINNGLS607

Predicted 3D structure by AlphaFold2 with pLDDT = 90.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM2(35-131)+GH18(241-605)

MRFRHRAAAG  FATLLLPLAG  LVGLASPAEA  AGSATATYAK  TQDWGSGFEG  RWTVKNTGTT60
ALTSWTVEWD  FPSGTSVTSA  WDADVTSSGT  HWTARNKSWN  GTLAPGASVS  FGFNGTGSGS120
PANCKLNGGS  CDGGSTEPGD  SAPSAPGTPT  ASAITNTSVR  LSWSAATDDK  GVKNYDVLRD180
GAKVATVTTT  SYTDTGLTAG  TDYSYTVQAR  DTADQTGPVS  GARAVRTTGG  TTEPPTGDKV240
KLGYFTEWGV  YGRNYHVKNL  VTSGSASKIT  HINYAFGNVK  NGQCTVDDTY  AAYDKAYTAD300
QSVSGTADTW  DQPLRGNFNQ  LRQLKAKYPH  IKVLYSFGGW  TYSGGFGQAA  QNAAAFAKSC360
KAVVEDPRWA  DVFDGIDIDW  EYPNACGLTC  DTSGPAAFGN  LMRALRSEFG  ENYLVTAAIT420
ADGSDGGKID  AADYGGAARY  VDWYNVMTYD  YFGAWDRTGP  TAPHSPLTSY  AGIPNPAFNS480
AAAIAKLKAK  GVQGGKLLLG  IGFYGRGWTG  VTQSAPGGTA  TGPATGTYEA  GIEDYKVLKT540
SCPATGTVGG  TAYAHCGSNW  WSYDTPATIG  TKMAWAKAQG  LGGAFFWEFS  GDTAGGELVS600
AINNGLS607

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help