CAZyme3D

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Entry ID

Information for CAZyme ID: QOS16774.1

Basic Information

GenBank IDQOS16774.1
FamilyGT2
Sequence Length752
UniProt IDA0A7M1WAB8(100,100)Download
Average pLDDT?86.89
CAZy50 ID32465
CAZy50 RepNo, QOS22567.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID670
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio parahaemolyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNQINNSIIL  LAEQAAECNQ  IQHGSTQEFR  SEGQDPHWIW  EELDLTEGWY  KATAQIQITA60
DYVTPHKFYH  GVAHVFSEQQ  SCSFEQIDES  IYVTYFYVES  KCTDIRYDPM  ETIGHVTFEG120
LSIEACETDK  VPEKYLINKQ  TEHATSTVER  IKRMKAFPYL  NKALHKMPRL  RAFVVKCFSA180
SNASAQVEHY  NEWLKINEQI  PNKEFQQKQA  SKLASKPLIS  VVMPTYNTDP  KLLQECIDSV240
LEQGYQHWEL  CIADDASTNT  ATKELLESYV  QRDNRIKVTY  RETNGHICRA  TNDALELTSG300
EWIALLDHDD  LLAPHALLTI  AKAINANPSA  DIFYSDEDKI  TLDGTRTDPH  LKPQWSRDLL360
YSHNYISHLG  VYRKEIIYSV  GGFRIGFEGS  QDYDLLLRCI  NHIESNVCGR  DLTNKIIHVP420
HILYHWRVLE  GSTALSEGQK  SYSQDSGVKA  LQSALPNTIV  EPGPLANTYK  VNWPIASEEP480
LVSLVIPTKN  GMELVKQCIE  SIEKLTSYKN  WEILLVDNQS  DKAEDIAYFK  QLSRDKRILL540
LSYDKPFNYS  AINNYAIEYA  QGSIVVLLNN  DVEVISPDWL  SEMVSLCSRD  EIGCVGAKLY600
YPNDTLQHAG  VILGLGGVAG  HSHKYFDKDQ  DGYFKRLKIR  QNLSAVTAAC  LAVRKDVYNQ660
VNGLNEEDLT  VAFNDVDFCL  KVQAAGYKNV  WTPYAELYHH  ESISRGTEDT  PEKRARFASE720
VDYMKRTWNS  ELRNDPYYHP  LLTRDREDFS  KR752

Predicted 3D structure by AlphaFold2 with pLDDT = 86.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(220-377)+GT2(483-659)

MNQINNSIIL  LAEQAAECNQ  IQHGSTQEFR  SEGQDPHWIW  EELDLTEGWY  KATAQIQITA60
DYVTPHKFYH  GVAHVFSEQQ  SCSFEQIDES  IYVTYFYVES  KCTDIRYDPM  ETIGHVTFEG120
LSIEACETDK  VPEKYLINKQ  TEHATSTVER  IKRMKAFPYL  NKALHKMPRL  RAFVVKCFSA180
SNASAQVEHY  NEWLKINEQI  PNKEFQQKQA  SKLASKPLIS  VVMPTYNTDP  KLLQECIDSV240
LEQGYQHWEL  CIADDASTNT  ATKELLESYV  QRDNRIKVTY  RETNGHICRA  TNDALELTSG300
EWIALLDHDD  LLAPHALLTI  AKAINANPSA  DIFYSDEDKI  TLDGTRTDPH  LKPQWSRDLL360
YSHNYISHLG  VYRKEIIYSV  GGFRIGFEGS  QDYDLLLRCI  NHIESNVCGR  DLTNKIIHVP420
HILYHWRVLE  GSTALSEGQK  SYSQDSGVKA  LQSALPNTIV  EPGPLANTYK  VNWPIASEEP480
LVSLVIPTKN  GMELVKQCIE  SIEKLTSYKN  WEILLVDNQS  DKAEDIAYFK  QLSRDKRILL540
LSYDKPFNYS  AINNYAIEYA  QGSIVVLLNN  DVEVISPDWL  SEMVSLCSRD  EIGCVGAKLY600
YPNDTLQHAG  VILGLGGVAG  HSHKYFDKDQ  DGYFKRLKIR  QNLSAVTAAC  LAVRKDVYNQ660
VNGLNEEDLT  VAFNDVDFCL  KVQAAGYKNV  WTPYAELYHH  ESISRGTEDT  PEKRARFASE720
VDYMKRTWNS  ELRNDPYYHP  LLTRDREDFS  KR752

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help