CAZyme3D

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Entry ID

Information for CAZyme ID: QOL56237.1

Basic Information

GenBank IDQOL56237.1
FamilyGH51
Sequence Length732
UniProt IDA0A7L9UMG1(100,100)Download
Average pLDDT?88.15
CAZy50 ID26520
CAZy50 RepNo, QOL31782.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1679
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium longum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFFEDINHGA  DGGLNANMVN  NYSFDGVYLD  HHTWRMAGAE  RWRTQADSLR  FWDFINCSAA60
SLGSEIRGIH  GQRGTTDCPA  PPIHAHSRYA  RITSDVPSET  GPAYLENLGY  NGGGDNGGEP120
AFSIVADHTY  SVSLAVRPVH  GRAKLSVGVV  DRYGLPLTST  TRLSYIVDAD  PLDDTEETGL180
RQDDGANAQD  SGVSISPDSS  DGAIAIGRDG  WYRFNADVTG  LNTDYGKLRI  TIDAGERTTF240
DLDLVQFMDA  DYWGAGDPKW  RYGKLRRDLV  ETIQALHPAF  LRFPGGCIVE  GVTPGNEYRW300
KDTVGSLAAR  RQQYSMWSFK  MPDGSSYSQS  YQIGFYEYFC  LCEDLKAKPL  PTLFAGIACQ360
SPGRDPHHMD  INSATFRNNV  IQDYLDLIEF  ANGDPESSSW  AAVRRDMGHP  EPFGLDMIGV420
GNENFGADYV  AKFDMISEAI  HERYPDMLCV  MSAGLFPFQP  TMKRSWDHAR  ALAATDSGAH480
DSATGDAIIV  DEHSYHSPEW  FAYQASRFDA  YPRCGAGVYF  GEYSANGYFA  GQPQTEQGAN540
TWKSALGEAA  FLTGCERNSD  VVRMTSYAPL  LAHIPAKGWA  QNLIELNPAH  VNPTVNYEVE600
RLFSTHLGDT  TYAVSIEQTA  SRPAKHLYVS  ATGHDGDDAC  RYIKIVNTSD  SPVDVTLEIA660
RGLAGLGASP  SRPVRLEVTT  LSASPTAKTT  IGYRGEASGA  IVPERRAYTL  PSPSSLLAMK720
IKPYSVTLVA  SR732

Predicted 3D structure by AlphaFold2 with pLDDT = 88.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(249-731)

MFFEDINHGA  DGGLNANMVN  NYSFDGVYLD  HHTWRMAGAE  RWRTQADSLR  FWDFINCSAA60
SLGSEIRGIH  GQRGTTDCPA  PPIHAHSRYA  RITSDVPSET  GPAYLENLGY  NGGGDNGGEP120
AFSIVADHTY  SVSLAVRPVH  GRAKLSVGVV  DRYGLPLTST  TRLSYIVDAD  PLDDTEETGL180
RQDDGANAQD  SGVSISPDSS  DGAIAIGRDG  WYRFNADVTG  LNTDYGKLRI  TIDAGERTTF240
DLDLVQFMDA  DYWGAGDPKW  RYGKLRRDLV  ETIQALHPAF  LRFPGGCIVE  GVTPGNEYRW300
KDTVGSLAAR  RQQYSMWSFK  MPDGSSYSQS  YQIGFYEYFC  LCEDLKAKPL  PTLFAGIACQ360
SPGRDPHHMD  INSATFRNNV  IQDYLDLIEF  ANGDPESSSW  AAVRRDMGHP  EPFGLDMIGV420
GNENFGADYV  AKFDMISEAI  HERYPDMLCV  MSAGLFPFQP  TMKRSWDHAR  ALAATDSGAH480
DSATGDAIIV  DEHSYHSPEW  FAYQASRFDA  YPRCGAGVYF  GEYSANGYFA  GQPQTEQGAN540
TWKSALGEAA  FLTGCERNSD  VVRMTSYAPL  LAHIPAKGWA  QNLIELNPAH  VNPTVNYEVE600
RLFSTHLGDT  TYAVSIEQTA  SRPAKHLYVS  ATGHDGDDAC  RYIKIVNTSD  SPVDVTLEIA660
RGLAGLGASP  SRPVRLEVTT  LSASPTAKTT  IGYRGEASGA  IVPERRAYTL  PSPSSLLAMK720
IKPYSVTLVA  SR732

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help