CAZyme3D

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Entry ID

Information for CAZyme ID: QOJ91437.1

Basic Information

GenBank IDQOJ91437.1
FamilyGH50
Sequence Length744
UniProt IDA0A7L9GGL9(100,100)Download
Average pLDDT?92.81
CAZy50 ID25089
CAZy50 RepNo, BBP81741.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID470150
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas taiwanensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRRTLPAVF  ALLCSSPLLA  GQQTLFSFVR  PASVVNVATV  DAGMPQYNAE  QTAEGEVLRR60
VVFNPAQQPT  LRLSPQSGVW  DWSAGQFLTL  RLQSAMDWAL  TVDVTVQGSD  GRTLTSRIDL120
PAGPAQTVLV  PLTASSPLDQ  GMRAGPPMPW  NHGGQRLLLT  SSAGAIDLKQ  VTSVSLSIPS180
PKVAQSLLIE  RVGIQDDNQA  YRAAYHELID  AYGQSTRGNW  PEKVSSDEQL  KAADTREQQQ240
LKGWLAERGK  QRLDAYGGLV  GGPAFAAKGF  FRTEKRDGRW  YLVTPDGHPF  YSLGVNAVAA300
DGGRTYVAGR  EGMFKALPAE  GDALAAFYGE  SNNDDGNASS  QGRNFKQGRW  FDFYAANLQR360
TYGKPCPPAV  EGQPADCAPP  LLDADRWQAH  ALDRLQAWGF  NTVGNWSEPA  LGQARRMPYT420
LPLSIVGDYA  SISTGMDWWG  RMPDPFDPRF  AMATERAVAI  AARDHRDDPW  LIGYFADNEL480
AWAAPGSDPK  SRYGLAYGTL  RLTTDVPAKR  AFLKQLRDKY  RNQEGLSKAW  GIELTAWELM540
EDPGFEAPLP  DPEHPEIERD  YQHFQRVFAE  TYFKTISDSL  KWHAPNHMLL  GGRYAVSTPE600
AVKACAEFCD  VLSFNFYTLK  PQDGYDFVRL  AELDKPVLVS  EFQFGSRDRG  PFWPGPLELA660
REEDRGPAYA  NFLKAAMAQP  MIVGAHWFQY  LDQPASGRLL  DGENGHLGLV  AITDRPYPGF720
VDAVRKSNLQ  TMNQLRAELE  KPAP744

Predicted 3D structure by AlphaFold2 with pLDDT = 92.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(75-731)

MIRRTLPAVF  ALLCSSPLLA  GQQTLFSFVR  PASVVNVATV  DAGMPQYNAE  QTAEGEVLRR60
VVFNPAQQPT  LRLSPQSGVW  DWSAGQFLTL  RLQSAMDWAL  TVDVTVQGSD  GRTLTSRIDL120
PAGPAQTVLV  PLTASSPLDQ  GMRAGPPMPW  NHGGQRLLLT  SSAGAIDLKQ  VTSVSLSIPS180
PKVAQSLLIE  RVGIQDDNQA  YRAAYHELID  AYGQSTRGNW  PEKVSSDEQL  KAADTREQQQ240
LKGWLAERGK  QRLDAYGGLV  GGPAFAAKGF  FRTEKRDGRW  YLVTPDGHPF  YSLGVNAVAA300
DGGRTYVAGR  EGMFKALPAE  GDALAAFYGE  SNNDDGNASS  QGRNFKQGRW  FDFYAANLQR360
TYGKPCPPAV  EGQPADCAPP  LLDADRWQAH  ALDRLQAWGF  NTVGNWSEPA  LGQARRMPYT420
LPLSIVGDYA  SISTGMDWWG  RMPDPFDPRF  AMATERAVAI  AARDHRDDPW  LIGYFADNEL480
AWAAPGSDPK  SRYGLAYGTL  RLTTDVPAKR  AFLKQLRDKY  RNQEGLSKAW  GIELTAWELM540
EDPGFEAPLP  DPEHPEIERD  YQHFQRVFAE  TYFKTISDSL  KWHAPNHMLL  GGRYAVSTPE600
AVKACAEFCD  VLSFNFYTLK  PQDGYDFVRL  AELDKPVLVS  EFQFGSRDRG  PFWPGPLELA660
REEDRGPAYA  NFLKAAMAQP  MIVGAHWFQY  LDQPASGRLL  DGENGHLGLV  AITDRPYPGF720
VDAVRKSNLQ  TMNQLRAELE  KPAP744

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help