CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QNS16152.1

Basic Information

GenBank IDQNS16152.1
FamilyGT52
Sequence Length312
UniProt IDA0A7H1C597(100,100)Download
Average pLDDT?90.42
CAZy50 ID148253
CAZy50 RepNo, QIM65589.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2770636
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMannheimia
SpeciesMannheimia bovis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLIICCTPL  QVLIAEKIIG  MHPNEPFFGV  MLSTVKNAKF  DFYQTRLEQK  CQQFFAMQQH60
SERIQLLKEI  LYLKSTFRGK  EFNKVFLANI  NELEIQFLLS  AIKFNELNTF  DDGAANIVPS120
SIFYKEENIG  LNRKLINMFL  GNKYSVEKLK  NLSKTHYTIY  QGFSNIIENT  VYVDLINTKE180
LSGSELENSK  VVNILLGQPI  FEREDDKNIA  LAEKVIKVFD  IDLYLPHPRE  KYKLDNVEYI240
DTNLILEDYI  FQEFSHKKCR  VYTYFSSAVI  NILNKSPNIE  VTALRVEVDN  PAYIETYELF300
EKLGIKIIDI  RE312

Predicted 3D structure by AlphaFold2 with pLDDT = 90.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT52(26-285)

MNLIICCTPL  QVLIAEKIIG  MHPNEPFFGV  MLSTVKNAKF  DFYQTRLEQK  CQQFFAMQQH60
SERIQLLKEI  LYLKSTFRGK  EFNKVFLANI  NELEIQFLLS  AIKFNELNTF  DDGAANIVPS120
SIFYKEENIG  LNRKLINMFL  GNKYSVEKLK  NLSKTHYTIY  QGFSNIIENT  VYVDLINTKE180
LSGSELENSK  VVNILLGQPI  FEREDDKNIA  LAEKVIKVFD  IDLYLPHPRE  KYKLDNVEYI240
DTNLILEDYI  FQEFSHKKCR  VYTYFSSAVI  NILNKSPNIE  VTALRVEVDN  PAYIETYELF300
EKLGIKIIDI  RE312

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help