CAZyme3D

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Entry ID

Information for CAZyme ID: QNN65136.1

Basic Information

GenBank IDQNN65136.1
FamilyGH51
Sequence Length406
UniProt IDA0A7G9SBB1(100,100)Download
Average pLDDT?96.38
CAZy50 ID31077
CAZy50 RepNo, CAD0345758.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2071607
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas rhizophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRWPGGCFAD  EYHWRDGVGP  KRRTGINASW  GGVPEPNSFG  TDEFYGFIER  IGADAYISGN60
VGSAAPNELS  DWLGYITAKP  GTSLGDERAA  NGHREPWQVA  IVGIGNELWG  CGGNMRPEYA120
ADETARYATF  ARSANGPMLK  LAVGPSEGDT  NWTDVMMRQA  GRTVDGISLH  YYTVPGGWEK180
KSPATGFGER  EWAETLSLTL  RMDKLIADHS  AVMDKHDPKR  TKILAVDEWG  SWYAETKGQP240
TLWQQNSLRD  AVLAAANLNI  FAKHAERVKI  SAIAQMVNVL  QAMLLTDGPT  MVRTPTYWTY300
WLYRPWQDAT  VLPVDVQAST  YEAHGFSMPS  ISASAVRGKD  GGTYISLVNL  DPRRALPLHL360
PGMRARTVTG  QILTAGSIDA  HNDVRTPDAV  KPAPFTTARV  DGEGFG406

Predicted 3D structure by AlphaFold2 with pLDDT = 96.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(1-398)

MRWPGGCFAD  EYHWRDGVGP  KRRTGINASW  GGVPEPNSFG  TDEFYGFIER  IGADAYISGN60
VGSAAPNELS  DWLGYITAKP  GTSLGDERAA  NGHREPWQVA  IVGIGNELWG  CGGNMRPEYA120
ADETARYATF  ARSANGPMLK  LAVGPSEGDT  NWTDVMMRQA  GRTVDGISLH  YYTVPGGWEK180
KSPATGFGER  EWAETLSLTL  RMDKLIADHS  AVMDKHDPKR  TKILAVDEWG  SWYAETKGQP240
TLWQQNSLRD  AVLAAANLNI  FAKHAERVKI  SAIAQMVNVL  QAMLLTDGPT  MVRTPTYWTY300
WLYRPWQDAT  VLPVDVQAST  YEAHGFSMPS  ISASAVRGKD  GGTYISLVNL  DPRRALPLHL360
PGMRARTVTG  QILTAGSIDA  HNDVRTPDAV  KPAPFTTARV  DGEGFG406

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help