CAZyme3D

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Entry ID

Information for CAZyme ID: QNN42921.1

Basic Information

GenBank IDQNN42921.1
FamilyGH32
Sequence Length505
UniProt IDA0A7G9QHU6(100,100)Download
Average pLDDT?93.56
CAZy50 ID59610
CAZy50 RepNo, UIR54679.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID336820
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter roseus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNKFIRTAI  FLLCSLFSIG  ANAQSAGGEK  YRPAFHFSPK  AHWMNDPNGM  VYYNGVYHLF60
FQYHPGGTTW  GPMHWGHATS  RDLFTWEEKP  IALYPDSLGT  IFSGSAVIDK  DNTAGFGKNA120
MVAIFTHHNQ  KIEEAKTGLH  QYQSIAYSKD  EGETWTKYKG  NPVLPNPGIT  DFRDPKVMWF180
EQGKKWIMTL  ATKDRITFYS  SPDLKAWKRE  SDFGASLGAH  GGVWECPDLF  SLKSNGKTVW240
VLLVSINPGG  PNGGSATQYF  TGSFDGNKFV  PNSTQQKWVD  YGADDYAGVT  WSNTGDRKIF300
LGWMNNWQYA  NQVPTKTWRG  ATTIARELSL  ESAGNEYYLR  SMPVREISPL  LKSVYKVTNV360
SIGKELDLSS  HIKPLNGKFK  IDLSLAKSEK  VDIVFENRDG  EQLIIGYDEK  NNNFFIDRTR420
SGDTSFEKGF  AKKHIAQRIS  KSKNLKFSII  FDEASVELFS  DNGLTVMTDI  FFSHSFWDTL480
KIRTSSDIKL  SDISVWTIDL  KKRGR505

Predicted 3D structure by AlphaFold2 with pLDDT = 93.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(36-335)

MKNKFIRTAI  FLLCSLFSIG  ANAQSAGGEK  YRPAFHFSPK  AHWMNDPNGM  VYYNGVYHLF60
FQYHPGGTTW  GPMHWGHATS  RDLFTWEEKP  IALYPDSLGT  IFSGSAVIDK  DNTAGFGKNA120
MVAIFTHHNQ  KIEEAKTGLH  QYQSIAYSKD  EGETWTKYKG  NPVLPNPGIT  DFRDPKVMWF180
EQGKKWIMTL  ATKDRITFYS  SPDLKAWKRE  SDFGASLGAH  GGVWECPDLF  SLKSNGKTVW240
VLLVSINPGG  PNGGSATQYF  TGSFDGNKFV  PNSTQQKWVD  YGADDYAGVT  WSNTGDRKIF300
LGWMNNWQYA  NQVPTKTWRG  ATTIARELSL  ESAGNEYYLR  SMPVREISPL  LKSVYKVTNV360
SIGKELDLSS  HIKPLNGKFK  IDLSLAKSEK  VDIVFENRDG  EQLIIGYDEK  NNNFFIDRTR420
SGDTSFEKGF  AKKHIAQRIS  KSKNLKFSII  FDEASVELFS  DNGLTVMTDI  FFSHSFWDTL480
KIRTSSDIKL  SDISVWTIDL  KKRGR505

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help