CAZyme3D

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Entry ID

Information for CAZyme ID: QNL52090.1

Basic Information

GenBank IDQNL52090.1
FamilyGT2
Sequence Length310
UniProt IDA0A7G9BRA9(100,100)Download
Average pLDDT?94.99
CAZy50 ID146414
CAZy50 RepNo, AGA80427.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2764720
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusOlivibacter
SpeciesOlivibacter sp. SDN3

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKFSICIPA  YKTRYLKACI  DSILKQSIED  FELIILNDCS  PEPVEAIVKQ  FNDQRISYYS60
NKKNVGALHL  VDNWNKCLSL  ARGTYIVIMG  DDDLLEPDYL  NEFAQLINLF  PDLNVYHCRS120
KIINDEGETI  MLTPSCPLFE  SVYDSIWHRL  AQYRSNYISD  FMYRTEALQQ  QGGFYNLPLA180
WGSDDITAFI  AAHRQGIAHS  SKPVFNYRSN  NLSITSTGND  LQKMEANLGY  AKWLGHFLQE240
QPTNSDDDIV  YQYLVNKQHG  FMAKRKRYTM  MLSMRRQLLN  KSFLWFRYRK  KFDISVKDIL300
IAAVKSLNTN  310

Predicted 3D structure by AlphaFold2 with pLDDT = 94.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(5-120)

MTKFSICIPA  YKTRYLKACI  DSILKQSIED  FELIILNDCS  PEPVEAIVKQ  FNDQRISYYS60
NKKNVGALHL  VDNWNKCLSL  ARGTYIVIMG  DDDLLEPDYL  NEFAQLINLF  PDLNVYHCRS120
KIINDEGETI  MLTPSCPLFE  SVYDSIWHRL  AQYRSNYISD  FMYRTEALQQ  QGGFYNLPLA180
WGSDDITAFI  AAHRQGIAHS  SKPVFNYRSN  NLSITSTGND  LQKMEANLGY  AKWLGHFLQE240
QPTNSDDDIV  YQYLVNKQHG  FMAKRKRYTM  MLSMRRQLLN  KSFLWFRYRK  KFDISVKDIL300
IAAVKSLNTN  310

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help