CAZyme3D

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Entry ID

Information for CAZyme ID: QNK60517.1

Basic Information

GenBank IDQNK60517.1
FamilyCBM35, CBM61, GH31
Sequence Length1260
UniProt IDA0A7G8UXC4(100,100)Download
Average pLDDT?95.78
CAZy50 ID5904
CAZy50 RepNo, CCO64981.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2762320
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. PAMC21692

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVFSLIGIAR  PGTTLAYVGA  LGNVTGASVS  GDSVTLTIDN  GAEPNDDKLI  IDVLKSDIVK60
VSYRPNDVSP  SPDTPMIDPG  KTWSAVGATI  NTSSNPITIV  TSEIRVEIAK  TPARVTIKKA120
DGTTLLWEPS  GGGVFYDGVR  FMRNSGDNIY  GIRSYNANES  APDLLRNSST  HPAHAGNQGD180
SGGPLMWSTS  GYGLLVDSDG  GYPYSDTTGK  LEFYYGGTPD  EGRRYFKTDV  EYYAMVGSPE240
EIMASVGEIT  GKSPMLPKWS  LGFMNFEWDT  NQTEMTSMID  TYRAKDIPLD  AYGLDYDWKK300
YGDTNYGEFA  WNTANFPSAG  TTALKTAMDA  KGIKLIGITK  PRIVTEDSSG  NRTTQYNDAN360
AAGYWYPGHG  EYNDYFIPVK  VRSIDPYNAG  MRAWYWDHSE  DAYDKGIVGW  WNDETDKIAS420
GSAQWWFGNF  STTHLSQAMY  EGQRAYTNNQ  ARVWQTARTF  YPGAQRYATT  LWSGDIGGQF480
EMGEKVGWAS  GMKEQRTVML  SSVNMGQPKW  GMDTGGFNPN  DSNPSPELYA  RWMQFAALTP540
VFRVHGNLYH  QRQPWFYGPT  AEEASKAAIK  LRYSLIPYMY  AYEREAYETG  NGLVRPLLFD600
YPNDPAVSNY  VDGWMFGDWL  LAAPVVDKGQ  TVKPIYLPAG  TWTDYFTGKT  YAGGQTIQYA660
LNADDWSDIP  LFIKKGAIIP  TQEPQDYIGQ  SAVTTVDVDV  FPDIAATSFT  YYDDDGGSYD720
YESGEIFKQT  LTAQDNGGSG  VSFSVGAKTG  TFAPALQNYI  VKIHGKAGTG  VTLGGSGMTS780
YGDLAALRAA  SGEGWTTGRD  IYGEVTYVKV  AAGSGSAKNI  VVSGTGAPAA  TAMKLEAEQA840
SLSGATPATQ  AAVNNNHAGY  SGTGFVDKIE  NDGASVTFYA  DVKAAGDYAV  DLRYANGNGS900
AKSLSIFVNG  KRVKGTSLAN  LASWSTWGTA  TETVPLAAGR  NAITYRYYAD  AGDTGYVNLD960
YISVPFYPSV  GKYEAEGAAL  SGGAATNKNH  GFHSGTAFVD  SMTAVGAAAT  FKVNVPSAGN1020
YQVALRYANG  TGSTKTLSTY  VNGVDVAQAS  LPSPGASWSA  WQDVSQSLTL  NAGENTIAFK1080
YDAADSGNVN  LDRILVSPSS  PGTPQSELNL  LDNGSFERVG  YSSAWTEWHP  SGQALAFGVD1140
SGSGTHPPTS  AWHRDARAYF  YSASAYQQSV  HQLVNVPVNN  ANYKLEAWVR  MQYATPTTAR1200
AEITSHGGSA  IYANIPNTGE  WEYISIDNIF  VTSGAVDVGF  YINSPGGTVL  HVDDVRLTKQ1260
1260

Predicted 3D structure by AlphaFold2 with pLDDT = 95.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH31(232-679)+CBM35(836-964)+CBM35(973-1095)+CBM61(1109-1257)

MVFSLIGIAR  PGTTLAYVGA  LGNVTGASVS  GDSVTLTIDN  GAEPNDDKLI  IDVLKSDIVK60
VSYRPNDVSP  SPDTPMIDPG  KTWSAVGATI  NTSSNPITIV  TSEIRVEIAK  TPARVTIKKA120
DGTTLLWEPS  GGGVFYDGVR  FMRNSGDNIY  GIRSYNANES  APDLLRNSST  HPAHAGNQGD180
SGGPLMWSTS  GYGLLVDSDG  GYPYSDTTGK  LEFYYGGTPD  EGRRYFKTDV  EYYAMVGSPE240
EIMASVGEIT  GKSPMLPKWS  LGFMNFEWDT  NQTEMTSMID  TYRAKDIPLD  AYGLDYDWKK300
YGDTNYGEFA  WNTANFPSAG  TTALKTAMDA  KGIKLIGITK  PRIVTEDSSG  NRTTQYNDAN360
AAGYWYPGHG  EYNDYFIPVK  VRSIDPYNAG  MRAWYWDHSE  DAYDKGIVGW  WNDETDKIAS420
GSAQWWFGNF  STTHLSQAMY  EGQRAYTNNQ  ARVWQTARTF  YPGAQRYATT  LWSGDIGGQF480
EMGEKVGWAS  GMKEQRTVML  SSVNMGQPKW  GMDTGGFNPN  DSNPSPELYA  RWMQFAALTP540
VFRVHGNLYH  QRQPWFYGPT  AEEASKAAIK  LRYSLIPYMY  AYEREAYETG  NGLVRPLLFD600
YPNDPAVSNY  VDGWMFGDWL  LAAPVVDKGQ  TVKPIYLPAG  TWTDYFTGKT  YAGGQTIQYA660
LNADDWSDIP  LFIKKGAIIP  TQEPQDYIGQ  SAVTTVDVDV  FPDIAATSFT  YYDDDGGSYD720
YESGEIFKQT  LTAQDNGGSG  VSFSVGAKTG  TFAPALQNYI  VKIHGKAGTG  VTLGGSGMTS780
YGDLAALRAA  SGEGWTTGRD  IYGEVTYVKV  AAGSGSAKNI  VVSGTGAPAA  TAMKLEAEQA840
SLSGATPATQ  AAVNNNHAGY  SGTGFVDKIE  NDGASVTFYA  DVKAAGDYAV  DLRYANGNGS900
AKSLSIFVNG  KRVKGTSLAN  LASWSTWGTA  TETVPLAAGR  NAITYRYYAD  AGDTGYVNLD960
YISVPFYPSV  GKYEAEGAAL  SGGAATNKNH  GFHSGTAFVD  SMTAVGAAAT  FKVNVPSAGN1020
YQVALRYANG  TGSTKTLSTY  VNGVDVAQAS  LPSPGASWSA  WQDVSQSLTL  NAGENTIAFK1080
YDAADSGNVN  LDRILVSPSS  PGTPQSELNL  LDNGSFERVG  YSSAWTEWHP  SGQALAFGVD1140
SGSGTHPPTS  AWHRDARAYF  YSASAYQQSV  HQLVNVPVNN  ANYKLEAWVR  MQYATPTTAR1200
AEITSHGGSA  IYANIPNTGE  WEYISIDNIF  VTSGAVDVGF  YINSPGGTVL  HVDDVRLTKQ1260
1260

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help