CAZyme3D

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Entry ID

Information for CAZyme ID: QNJ10649.1

Basic Information

GenBank IDQNJ10649.1
FamilyGH13_20
Sequence Length463
UniProt IDA0A7G8HX53(100,100)Download
Average pLDDT?93.98
CAZy50 ID69909
CAZy50 RepNo, QEY33441.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1442553
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. M16.1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MADAVIYQIF  PDRFRRSGRV  AAQRHLALKP  WGADPCEEGF  QGGDLYGVID  ALDRLQAMGI60
TCLYLTPIFS  SAANHRYHAY  DYFEVDPLLG  GNTALTDLID  AVHQRGMRLV  LDGVFNHCGR120
GFWAFHHVAE  NGADSPYRDW  FHVHRWPLQP  YPAPGEDCGY  DGWWALPDLP  KFNHANPGVR180
EHLLAVGRHW  LEQGIDGWRL  DVPAEVPADF  WVEFRQMVRA  TNPEAWIVGE  VWGDATPWLQ240
GDHFDGVMNY  RLGWSSLCWA  AAEALRQDYR  NSDYPLDPLD  GQAVLTIWTT  TTRSYREGVN300
RAQMNLLDSH  DVPRALHSLN  NDVAALKLAL  LLLFLHPGAP  CIYYGTEAAL  AGGPEPGPSS360
GPGPACREAY  PWNVPWSADL  RPFIQSLAEL  RSAHGVLRRD  GLRWSAPGAD  VLEGVADGLR420
VVINRSRSNS  VPLTNDQGLS  CVWTLGTVDC  RSVGPQSAAV  LGS463

Predicted 3D structure by AlphaFold2 with pLDDT = 93.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_20(43-356)

MADAVIYQIF  PDRFRRSGRV  AAQRHLALKP  WGADPCEEGF  QGGDLYGVID  ALDRLQAMGI60
TCLYLTPIFS  SAANHRYHAY  DYFEVDPLLG  GNTALTDLID  AVHQRGMRLV  LDGVFNHCGR120
GFWAFHHVAE  NGADSPYRDW  FHVHRWPLQP  YPAPGEDCGY  DGWWALPDLP  KFNHANPGVR180
EHLLAVGRHW  LEQGIDGWRL  DVPAEVPADF  WVEFRQMVRA  TNPEAWIVGE  VWGDATPWLQ240
GDHFDGVMNY  RLGWSSLCWA  AAEALRQDYR  NSDYPLDPLD  GQAVLTIWTT  TTRSYREGVN300
RAQMNLLDSH  DVPRALHSLN  NDVAALKLAL  LLLFLHPGAP  CIYYGTEAAL  AGGPEPGPSS360
GPGPACREAY  PWNVPWSADL  RPFIQSLAEL  RSAHGVLRRD  GLRWSAPGAD  VLEGVADGLR420
VVINRSRSNS  VPLTNDQGLS  CVWTLGTVDC  RSVGPQSAAV  LGS463

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help