CAZyme3D

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Entry ID

Information for CAZyme ID: QNH67990.1

Basic Information

GenBank IDQNH67990.1
FamilyGT1
Sequence Length521
UniProt IDA0A7H9SNJ1(100,100)Download
Average pLDDT?56.27
CAZy50 ID64513
CAZy50 RepNo, QNH67983.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID10195
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderPloima
FamilyBrachionidae
GenusBrachionus
SpeciesBrachionus plicatilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLFKNKRYG  SVETQRTDRV  IFLWSVPANG  HLNPTLCYAN  ELLKALPEMN  CSKLVFYSGK60
SFKDLILNLP  NNRGKDLIEF  RDYELEKNTG  TENLLKLIMN  FNTKPGTLFR  VFQCYENSIK120
LGAKHLFQRL  IQDMHNDQPV  LILYDQALFF  PKIACELYSK  KYSCAKPLHV  SYVTTFMCAR180
GIYPYWSDLE  KMGLLGNNLS  KRDKIRTFFI  LGNDFFHYLF  TYYKTLWWDL  HFSFLDLVLR240
CELPLSQVQM  IDQNMNLVFV  MPEVQPRLEY  FQNKGNIKFV  GPSVDEVVRS  NISQKKTDMD300
QYVERIEEFL  AANLVNSLGG  VKSTFMRSES  TGENFKKYHK  PIIYVSMGTV  FNNENSNLFR360
ILIEGCKKFS  DTYAIIISTG  DEKTYQKYAG  LYTNDNILLI  PHTPQVEILK  RTHLFITHAG420
MNSVSEAMNY  GVPIICIPLS  GDQPFVAWRV  ADELGMGIRL  QPDESLTVEK  VISSISNILN480
DPSYRLKAQS  LSKLSQNYAG  HKTAVEYTIK  ALRDHESKML  I521

Predicted 3D structure by AlphaFold2 with pLDDT = 56.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT1(339-506)

MKLFKNKRYG  SVETQRTDRV  IFLWSVPANG  HLNPTLCYAN  ELLKALPEMN  CSKLVFYSGK60
SFKDLILNLP  NNRGKDLIEF  RDYELEKNTG  TENLLKLIMN  FNTKPGTLFR  VFQCYENSIK120
LGAKHLFQRL  IQDMHNDQPV  LILYDQALFF  PKIACELYSK  KYSCAKPLHV  SYVTTFMCAR180
GIYPYWSDLE  KMGLLGNNLS  KRDKIRTFFI  LGNDFFHYLF  TYYKTLWWDL  HFSFLDLVLR240
CELPLSQVQM  IDQNMNLVFV  MPEVQPRLEY  FQNKGNIKFV  GPSVDEVVRS  NISQKKTDMD300
QYVERIEEFL  AANLVNSLGG  VKSTFMRSES  TGENFKKYHK  PIIYVSMGTV  FNNENSNLFR360
ILIEGCKKFS  DTYAIIISTG  DEKTYQKYAG  LYTNDNILLI  PHTPQVEILK  RTHLFITHAG420
MNSVSEAMNY  GVPIICIPLS  GDQPFVAWRV  ADELGMGIRL  QPDESLTVEK  VISSISNILN480
DPSYRLKAQS  LSKLSQNYAG  HKTAVEYTIK  ALRDHESKML  I521

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help